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(-) Description

Title :  CRYSTAL STRUCTURE OF TM_1862 FROM THERMOTOGA MARITIMA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VR77
 
Authors :  F. Forouhar, H. Neely, M. Hussain, J. Seetharaman, Y. Fang, C. X. Chen, K. Cunningham, K. Conover, L-C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  29 Jun 07  (Deposition) - 17 Jul 07  (Release) - 02 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Arragain, R. Garcia-Serres, G. Blondin, T. Douki, M. Clemancey, J. M. Latour, F. Forouhar, H. Neely, G. T. Montelione, J. F. Hunt, E. Mulliez, M. Fontecave, M. Atta
Post-Translational Modification Of Ribosomal Proteins: Structural And Functional Characterization Of Rimo From Thermotoga Maritima, A Radical S-Adenosylmethionine Methylthiotransferase.
J. Biol. Chem. V. 285 5792 2010
PubMed-ID: 20007320  |  Reference-DOI: 10.1074/JBC.M109.065516

(-) Compounds

Molecule 1 - PROTEIN TM_1862
    Atcc: 43589
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector: BL21
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 135-430, SEE REMARK 999
    Gene: TM_1862
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Strain: MSB8, DSM 3109, JCM 10099

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 52)

Asymmetric Unit (2, 52)
No.NameCountTypeFull Name
1CXS4Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1CXS-1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 7)
No.NameCountTypeFull Name
1CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1CXS-1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (2, 7)
No.NameCountTypeFull Name
1CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 6)
No.NameCountTypeFull Name
1CXS-1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 6)
No.NameCountTypeFull Name
1CXS-1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:385 , ARG A:404 , GLU A:419 , TRP A:426 , ARG G:404 , LYS G:418 , GLU G:419 , ASP G:421BINDING SITE FOR RESIDUE CXS A 501
2AC2SOFTWAREARG B:404 , GLU B:419 , HOH B:575 , HOH B:714 , PHE C:385 , GLU C:419 , TRP C:426BINDING SITE FOR RESIDUE CXS B 501
3AC3SOFTWAREARG D:404 , LYS D:418 , GLU D:419 , TRP D:426 , HOH D:593 , HOH D:649 , PHE E:385 , ARG E:404 , GLU E:419 , TRP E:426BINDING SITE FOR RESIDUE CXS D 504
4AC4SOFTWAREARG F:404 , LYS F:418 , GLU F:419 , ASP F:421 , TRP F:426 , PHE H:385 , ARG H:404 , GLU H:419 , TRP H:426BINDING SITE FOR RESIDUE CXS F 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QGQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QGQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QGQ)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  8A:142-162
B:142-162
C:142-162
D:142-162
E:142-162
F:142-162
G:142-162
H:142-162
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  8A:367-430
B:367-430
C:367-430
D:367-430
E:367-430
F:367-430
G:367-430
H:367-430
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1A:142-162
-
-
-
-
-
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1A:367-430
-
-
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
B:142-162
-
-
-
-
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
B:367-430
-
-
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
C:142-162
-
-
-
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
C:367-430
-
-
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
-
D:142-162
-
-
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
-
D:367-430
-
-
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
-
-
E:142-162
-
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
-
-
E:367-430
-
-
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
-
-
-
F:142-162
-
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
-
-
-
F:367-430
-
-
Biological Unit 7 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:142-162
-
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:367-430
-
Biological Unit 8 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MTTASE_RADICALPS01278 Methylthiotransferase radical SAM domain signature.RIMO_THEMA142-162
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:142-162
2TRAMPS50926 TRAM domain profile.RIMO_THEMA367-430
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:367-430

(-) Exons   (0, 0)

(no "Exon" information available for 2QGQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:296
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424      
           RIMO_THEMA   135 EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqA01 A:135-             370 tm_1862 like domain                                                                                                                                                                                          2qgqA02 A:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....-------------......hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh..hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: A:367-430 UniProt: 367-430                            PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq A 135 EERPYAYVKISDGC-------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   144   |     -       164       174       184       194       204       214       224 |     234      |244       254       264 |     274   |   284       294       304       314       324    |    -      |344 |     354       364       374       384       394       404       414       424|     
                                       148           162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                             346-MSE                                                                                


Chain B from PDB  Type:PROTEIN  Length:270
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqB01 B:13              6-370 tm_1862 like domain                                                                                                                                                                                        2qgqB02 B:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee.--------------...ee.hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh..hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: B:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq B 136 ERPYAYVKISDG--------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145 |       -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                     147            162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain C from PDB  Type:PROTEIN  Length:269
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqC01 C:1               36-370 tm_1862 like domain                                                                                                                                                                                       2qgqC02 C:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee---------------...ee.hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh..hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhh.....hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: C:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq C 136 ERPYAYVKISD---------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145|        -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                    146             162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain D from PDB  Type:PROTEIN  Length:269
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqD01 D:1               36-370 tm_1862 like domain                                                                                                                                                                                       2qgqD02 D:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee---------------...ee.hhhhhhhhhhhhhhh...eeeee..hhhhh........hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: D:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq D 136 ERPYAYVKISD---------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145|        -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                    146             162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain E from PDB  Type:PROTEIN  Length:270
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqE01 E:13              6-370 tm_1862 like domain                                                                                                                                                                                        2qgqE02 E:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....--------------......hhhhhhhhhhhhhhh...eeeee..hhhhh........hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: E:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq E 136 ERPYAYVKISDG--------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145 |       -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                     147            162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain F from PDB  Type:PROTEIN  Length:269
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqF01 F:1               36-370 tm_1862 like domain                                                                                                                                                                                       2qgqF02 F:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee---------------...ee.hhhhhhhhhhhhhhh...eeeee..hhhhh........hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: F:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq F 136 ERPYAYVKISD---------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145|        -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                    146             162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain G from PDB  Type:PROTEIN  Length:269
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqG01 G:1               36-370 tm_1862 like domain                                                                                                                                                                                       2qgqG02 G:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.ee---------------...ee.hhhhhhhhhhhhhhh...eeeee..hhhhh........hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: G:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq G 136 ERPYAYVKISD---------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145|        -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                    146             162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE                                                                                


Chain H from PDB  Type:PROTEIN  Length:270
 aligned with RIMO_THEMA | Q9X2H6 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:295
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425     
           RIMO_THEMA   136 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI 430
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qgqH01 H:13              6-370 tm_1862 like domain                                                                                                                                                                                        2qgqH02 H:371-430 Nucleic acid-binding proteins              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....--------------......hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh..hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...-----------....hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------MTTASE_RADICAL       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRAM  PDB: H:367-430 UniProt: 367-430                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgq H 136 ERPYAYVKISDG--------------GSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVmYLHPDHLTEEIISAmLELDKVVKYFDVPVQHGSDKILKLmGRTKSSEELKKmLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSD-----------KVDPEmAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDmWGSVI 430
                                   145 |       -      |165       175       185       195       205       215       225|      235     | 245       255       265|      275  |    285       295       305       315       325   |     -     | 345|      355       365       375       385       395       405       415       425     
                                     147            162                                                             226-MSE        241-MSE                  266-MSE     278-MSE                                            329         341    |                                                                            425-MSE 
                                                                                                                                                                                                                                            346-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QGQ)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2QGQ)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RIMO_THEMA | Q9X2H6)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0035599    aspartic acid methylthiotransferase activity    Catalysis of the methylthiolation (-SCH3 addition) of the beta-carbon of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009451    RNA modification    The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
    GO:0043412    macromolecule modification    The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties.
    GO:0018339    peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid    The modification of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid, typical of bacterial ribosomal protein S12.
    GO:0035600    tRNA methylthiolation    The addition of a methylthioether group (-SCH3) to a nucleotide in a tRNA molecule.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  2qgq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIMO_THEMA | Q9X2H6: 4jc0

(-) Related Entries Specified in the PDB File

vr77