2OIJ | AR0074 - JenaLib

Title :   HIV-1 SUBTYPE B DIS RNA EXTENDED DUPLEX AUCL3 SOAKED

Authors :   E. Ennifar, P. Walter, P. Dumas

Date :   11 Jan 07 (Deposition) - 13 Feb 07 (Release) - 10 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.31

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hiv-1, Metal Ions, Rna, Bulges (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Ennifar, P. Walter, P. Dumas
A Crystallographic Study Of The Binding Of 13 Metal Ions To Two Related Rna Duplexes.
Nucleic Acids Res. V. 31 2671 2003
PubMed-ID: 12736317 | Reference-DOI: 10.1093/NAR/GKG350

Compounds

*Molecule 1 - 5'-R(CPUPUPGPCPUPGPAPAPGPCPGPCPGPCPAPCPGP GPCPAPAPG)-3'**
	Chains	:	A, B
	Engineered	:	YES
	Other Details	:	HIV-1 SUBTYPE B DIS RNA
	Other Details - Source	:	CHEMICAL SYNTHESIS
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G A:4 , G B:4 , C B:20 , A B:21 , K B:104	BINDING SITE FOR RESIDUE K B 103
2	AC2	SOFTWARE	C A:5 , G B:4 , C B:5 , C B:20 , K B:103	BINDING SITE FOR RESIDUE K B 104
3	AC3	SOFTWARE	C A:17 , G A:18 , G B:7	BINDING SITE FOR RESIDUE AU3 B 101
4	AC4	SOFTWARE	G A:7 , A B:16 , C B:17 , G B:18	BINDING SITE FOR RESIDUE AU3 A 102

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:23
                                                      
                  2oij A  1 CUUGCUGAAGCGCGCACGGCAAG 23
                                    10        20

Chain B from PDB  Type:RNA  Length:23
                                                      
                  2oij B  1 CUUGCUGAAGCGCGCACGGCAAG 23
                                    10        20

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description