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(-) Description

Title :  CRYSTAL STRUCTURE OF IRAK4 KINASE DOMAIN COMPLEXED WITH STAUROSPORINE
 
Authors :  A. Kuglstatter, A. G. Villasenor, M. F. Browner
Date :  10 Jan 07  (Deposition) - 20 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Kuglstatter, A. G. Villasenor, D. Shaw, S. W. Lee, S. Tsing, L. Niu, K. W. Song, J. W. Barnett, M. F. Browner
Cutting Edge: Il-1 Receptor-Associated Kinase 4 Structures Reveal Novel Features And Multiple Conformations.
J. Immunol. V. 178 2641 2007
PubMed-ID: 17312103
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4
    ChainsA, B, C, D
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemUNIDENTIFIED BACULOVIRUS
    Expression System Taxid10469
    FragmentKINASE DOMAIN
    GeneIRAK4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIRAK-4, NY- REN-64 ANTIGEN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1SEP4Mod. Amino AcidPHOSPHOSERINE
2STU4Ligand/IonSTAUROSPORINE
3TPO7Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2STU1Ligand/IonSTAUROSPORINE
3TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2STU1Ligand/IonSTAUROSPORINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2STU1Ligand/IonSTAUROSPORINE
3TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 4 (3, 4)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2STU1Ligand/IonSTAUROSPORINE
3TPO2Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:192 , GLY A:193 , GLU A:194 , GLY A:195 , VAL A:200 , ALA A:211 , VAL A:263 , TYR A:264 , MET A:265 , GLY A:268 , ALA A:315 , ASN A:316 , LEU A:318 , SER A:328BINDING SITE FOR RESIDUE STU A 1
2AC2SOFTWAREMET B:192 , GLY B:193 , ALA B:211 , VAL B:263 , TYR B:264 , MET B:265 , GLY B:268 , ALA B:315 , ASN B:316 , LEU B:318 , SER B:328BINDING SITE FOR RESIDUE STU B 2
3AC3SOFTWAREMET C:192 , GLY C:193 , GLY C:195 , ALA C:211 , VAL C:263 , TYR C:264 , MET C:265 , GLY C:268 , ALA C:315 , ASN C:316 , LEU C:318 , SER C:328BINDING SITE FOR RESIDUE STU C 3
4AC4SOFTWAREMET D:192 , GLY D:193 , VAL D:200 , ALA D:211 , LYS D:213 , TYR D:262 , VAL D:263 , TYR D:264 , MET D:265 , GLY D:268 , ALA D:315 , ASN D:316 , LEU D:318 , SER D:328BINDING SITE FOR RESIDUE STU D 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OIC)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:392 -Pro A:393
2Glu B:392 -Pro B:393
3Glu C:392 -Pro C:393
4Glu D:392 -Pro D:393

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 20)

Asymmetric Unit (5, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072892G298DIRAK4_HUMANDisease (IRAK4D)568782766A/B/C/DG298D
2UniProtVAR_040589M355VIRAK4_HUMANPolymorphism142376871A/B/C/DM355V
3UniProtVAR_019355H390RIRAK4_HUMANPolymorphism4251583A/B/C/DH390R
4UniProtVAR_040590R391HIRAK4_HUMANPolymorphism55944915A/B/C/DR391H
5UniProtVAR_019356A428TIRAK4_HUMANPolymorphism4251545A/B/C/DA428T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072892G298DIRAK4_HUMANDisease (IRAK4D)568782766AG298D
2UniProtVAR_040589M355VIRAK4_HUMANPolymorphism142376871AM355V
3UniProtVAR_019355H390RIRAK4_HUMANPolymorphism4251583AH390R
4UniProtVAR_040590R391HIRAK4_HUMANPolymorphism55944915AR391H
5UniProtVAR_019356A428TIRAK4_HUMANPolymorphism4251545AA428T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072892G298DIRAK4_HUMANDisease (IRAK4D)568782766BG298D
2UniProtVAR_040589M355VIRAK4_HUMANPolymorphism142376871BM355V
3UniProtVAR_019355H390RIRAK4_HUMANPolymorphism4251583BH390R
4UniProtVAR_040590R391HIRAK4_HUMANPolymorphism55944915BR391H
5UniProtVAR_019356A428TIRAK4_HUMANPolymorphism4251545BA428T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072892G298DIRAK4_HUMANDisease (IRAK4D)568782766CG298D
2UniProtVAR_040589M355VIRAK4_HUMANPolymorphism142376871CM355V
3UniProtVAR_019355H390RIRAK4_HUMANPolymorphism4251583CH390R
4UniProtVAR_040590R391HIRAK4_HUMANPolymorphism55944915CR391H
5UniProtVAR_019356A428TIRAK4_HUMANPolymorphism4251545CA428T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072892G298DIRAK4_HUMANDisease (IRAK4D)568782766DG298D
2UniProtVAR_040589M355VIRAK4_HUMANPolymorphism142376871DM355V
3UniProtVAR_019355H390RIRAK4_HUMANPolymorphism4251583DH390R
4UniProtVAR_040590R391HIRAK4_HUMANPolymorphism55944915DR391H
5UniProtVAR_019356A428TIRAK4_HUMANPolymorphism4251545DA428T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OIC)

(-) Exons   (0, 0)

(no "Exon" information available for 2OIC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:279
 aligned with IRAK4_HUMAN | Q9NWZ3 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:296
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
          IRAK4_HUMAN   163 TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 458
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oicA01 A:163-264 Phosphorylase Kinase; domain 1                                                      2oicA02 A:265-458 Transferase(Phosphotransferase) domain 1                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhhhh......hhhhh..eeee....eeeeee....eeeeee.-----------hhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee........------.ee......hhhhh..hhhh.ee.hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------D--------------------------------------------------------V----------------------------------RH------------------------------------T------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oic A 163 TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL-----------KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARA------tVMtsRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 458
                                   172       182       192       202       212  |      -    |  232       242       252       262       272       282       292       302       312       322       332  |    342  ||   352       362       372       382       392       402       412       422       432       442       452      
                                                                              215         227                                                                                                         335      |  ||                                                                                                                
                                                                                                                                                                                                             342-TPO                                                                                                                
                                                                                                                                                                                                                345-TPO                                                                                                             
                                                                                                                                                                                                                 346-SEP                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:278
 aligned with IRAK4_HUMAN | Q9NWZ3 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:296
                                   173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      
          IRAK4_HUMAN   164 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 459
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oicB01 B:164-264 Phosphorylase   Kinase; domain 1                                                   2oicB02 B:265-459 Transferase(Phosphotransferase) domain 1                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhh......hhhhh..eee..--.eeeeeee..eeeeeee.----------hhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.------........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh................hhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------D--------------------------------------------------------V----------------------------------RH------------------------------------T------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oic B 164 RFHSFSFYELKNVTNNFDERPISVGGNKMGEG--GVVYKGYVNNTTVAVKKL----------LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARAS------VMtsRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 459
                                   173       183       193 |  |  203       213 |       -  |    233       243       253       263       273       283       293       303       313       323       333  |    343 ||    353       363       373       383       393       403       413       423       433       443       453      
                                                         195  |              215        226                                                                                                           336    343 ||                                                                                                                 
                                                            198                                                                                                                                                345-TPO                                                                                                              
                                                                                                                                                                                                                346-SEP                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:280
 aligned with IRAK4_HUMAN | Q9NWZ3 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:298
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450        
          IRAK4_HUMAN   161 SDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 458
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oicC01 C:161-264 Phosphorylase Kinase; domain 1                                                        2oicC02 C:265-458 Transferase(Phosphotransferase) domain 1                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhh.............eee.....eeeeeee..eeeeeee.--------..hhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....----------.ee...........hhhhhhhee.hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh................hhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------D--------------------------------------------------------V----------------------------------RH------------------------------------T------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oic C 161 SDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL--------EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFG----------tVMtsRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 458
                                   170       180       190       200       210    |    -   |   230       240       250       260       270       280       290       300       310       320       330|        - |  || 350       360       370       380       390       400       410       420       430       440       450        
                                                                                215      224                                                                                                        331        342-TPO                                                                                                                
                                                                                                                                                                                                                  345-TPO                                                                                                             
                                                                                                                                                                                                                   346-SEP                                                                                                            

Chain D from PDB  Type:PROTEIN  Length:287
 aligned with IRAK4_HUMAN | Q9NWZ3 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:299
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450         
          IRAK4_HUMAN   161 SDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 459
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oicD01 D:161-264 Phosphorylase Kinase; domain 1                                                        2oicD02 D:265-459 Transferase(Phosphotransferase) domain 1                                                                                                                                          CATH domains
           Pfam domains (1) --------------------------Pkinase-2oicD01 D:187-455                                                                                                                                                                                                                                                    ---- Pfam domains (1)
           Pfam domains (2) --------------------------Pkinase-2oicD02 D:187-455                                                                                                                                                                                                                                                    ---- Pfam domains (2)
           Pfam domains (3) --------------------------Pkinase-2oicD03 D:187-455                                                                                                                                                                                                                                                    ---- Pfam domains (3)
           Pfam domains (4) --------------------------Pkinase-2oicD04 D:187-455                                                                                                                                                                                                                                                    ---- Pfam domains (4)
         Sec.struct. author .....ee.hhhhhhhhh.............eee.....eeeeeee..eeeeeee.----------.hhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..--...ee......hhhhh..hhhh.ee.hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------D--------------------------------------------------------V----------------------------------RH------------------------------------T------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oic D 161 SDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKL----------LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASE--AQtVMtsRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 459
                                   170       180       190       200       210    |    -     | 230       240       250       260       270       280       290       300       310       320       330      |340 |  || 350       360       370       380       390       400       410       420       430       440       450         
                                                                                215        226                                                                                                            337  | |  ||                                                                                                                 
                                                                                                                                                                                                             340 |  ||                                                                                                                 
                                                                                                                                                                                                               342-TPO                                                                                                                 
                                                                                                                                                                                                                  345-TPO                                                                                                              
                                                                                                                                                                                                                   346-SEP                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OIC)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: PKinase (934)
(-)
Family: Pkinase (680)
1aPkinase-2oicD01D:187-455
1bPkinase-2oicD02D:187-455
1cPkinase-2oicD03D:187-455
1dPkinase-2oicD04D:187-455

(-) Gene Ontology  (30, 30)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (IRAK4_HUMAN | Q9NWZ3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005149    interleukin-1 receptor binding    Interacting selectively and non-covalently with the interleukin-1 receptor.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007254    JNK cascade    An intracellular protein kinase cascade containing at least a JNK (a MAPK), a JNKK (a MAPKK) and a JUN3K (a MAP3K). The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0002755    MyD88-dependent toll-like receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response.
    GO:0001816    cytokine production    The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0019221    cytokine-mediated signaling pathway    A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0002446    neutrophil mediated immunity    Any process involved in the carrying out of an immune response by a neutrophil.
    GO:1990266    neutrophil migration    The movement of an neutrophil within or between different tissues and organs of the body.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:0048661    positive regulation of smooth muscle cell proliferation    Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0034162    toll-like receptor 9 signaling pathway    Any series of molecular signals generated as a consequence of binding to toll-like receptor 9.
    GO:0002224    toll-like receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        IRAK4_HUMAN | Q9NWZ32nru 2nry 2o8y 2oib 2oid 3mop 4rmz 4u97 4u9a 4xs2 4y73 4yo6 4yp8 4ztl 4ztm 4ztn 5kx7 5kx8 5t1s 5t1t 5uiq 5uir 5uis 5uit 5uiu

(-) Related Entries Specified in the PDB File

2oib IRAK4 KINASE DOMAIN APO FORM