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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN CV_3147 FROM CHROMOBACTERIUM VIOLACEUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CVR68.
 
Authors :  S. M. Vorobiev, Y. Chen, J. Seetharaman, K. Cunningham, L. C. Ma, H. Janjua, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  01 Dec 06  (Deposition) - 12 Dec 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Nesg, Cvr68, Q7Ntb2, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Vorobiev, Y. Chen, J. Seetharaman, K. Cunningham, L. C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein Q7Ntb2_chrvo From Chromobacterium Violaceum
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CV_3147
    Mutation: YES
    Organism Scientific: CHROMOBACTERIUM VIOLACEUM
    Organism Taxid: 536
    Strain: HAMAP536

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 20)

Asymmetric Unit (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 40)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2O3I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O3I)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Thr A:154 -Pro A:155
2Gly A:264 -Pro A:265
3Ala A:316 -Pro A:317
4Thr B:154 -Pro B:155
5Pro B:174 -Pro B:175
6Gly B:264 -Pro B:265
7Ala B:316 -Pro B:317

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O3I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O3I)

(-) Exons   (0, 0)

(no "Exon" information available for 2O3I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
 aligned with Q7NTB2_CHRVO | Q7NTB2 from UniProtKB/TrEMBL  Length:397

    Alignment length:389
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         
         Q7NTB2_CHRVO     2 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPNGPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGESGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAMLDFLRRELDIKGKLLFGPATLASSEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 390
               SCOP domains d2o3ia1 A:2-390 Hypothetical protein CV3147                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2o3iA01 A:2-240 CV3147-like domain                                                                                                                                                                                                             2o3iA02 A:241-381 CV3147-like                                                                                                                --------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhh......hhhhhhhhhh............eeeehhhhh...eeeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh.eee..........hhhhhhhhhh......eeee.....eeeeeee.....---..hhhhhhhhhhhhhh.......eeeeeeeeehhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...eeeeeeeee...----------.eeeee....eeeeee...eeeeee.......ee...eeeeee........hhhhhh..............eeeeee..hhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o3i A   2 AFELSPSDLEPLLQGACFFGSGGGGTmISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVmVAYmGAPDAINQVQWPNGPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPmLTYAAAGVPPTPAFLAGESGLCVELGVRmPPPD---REDISTVVEQmLRPILTNPQFGQFGGLAmWmmSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAmLDFLRRELDIKGKLLFGPATLASP----------GKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 390
                                    11        21      | 31        41        51        61  |   | 71        81        91       101       111       121       131       141 |     151       161       171|   |  181       191       201      |211       221       231       241     | 251       261       271         -|      291       301       311       321       331       341       351       361       371       381         
                                                     28-MSE                              64-MSE                                                                        143-MSE                      172-MSE 180       190-MSE           208-MSE                                247-MSE                 271        282                                                                                                            
                                                                                             68-MSE                                                                                                                                       210-MSE                                                                                                                                                                                
                                                                                                                                                                                                                                           211-MSE                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:375
 aligned with Q7NTB2_CHRVO | Q7NTB2 from UniProtKB/TrEMBL  Length:397

    Alignment length:389
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         
         Q7NTB2_CHRVO     2 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPNGPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGESGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAMLDFLRRELDIKGKLLFGPATLASSEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 390
               SCOP domains d2o3ib_ B: Hypothetical protein CV3147                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2o3iB01 B:2-240 CV3147-like domain                                                                                                                                                                                                             2o3iB02 B:241-381 CV3147-like                                                                                                                --------- CATH domains
           Pfam domains (1) ---DUF917-2o3iB01 B:5-390                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) ---DUF917-2o3iB02 B:5-390                                                                                                                                                                                                                                                                                                                                                                             Pfam domains (2)
         Sec.struct. author .eeehhhhhhhhhhhhhhh......hhhhhhhhhh............eeeehhhhh...eeeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhh.eee..........hhhhhhhhhh......eeee.....eeeeeee....----..hhhhhhhhhhhhhhh......eeeeeeeeehhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...eeeeeeeee...----------.eeeeee..eeeeeee...eeeeee.......ee...eeeeee........hhhhhh..............eeeeee..hhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o3i B   2 AFELSPSDLEPLLQGACFFGSGGGGTmISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVmVAYmGAPDAINQVQWPNGPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPmLTYAAAGVPPTPAFLAGESGLCVELGVRmPPP----REDISTVVEQmLRPILTNPQFGQFGGLAmWmmSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAmLDFLRRELDIKGKLLFGPATLASP----------GKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 390
                                    11        21      | 31        41        51        61  |   | 71        81        91       101       111       121       131       141 |     151       161       171|  |   181       191       201      |211       221       231       241     | 251       261       271         -|      291       301       311       321       331       341       351       361       371       381         
                                                     28-MSE                              64-MSE                                                                        143-MSE                      172-MSE 180       190-MSE           208-MSE                                247-MSE                 271        282                                                                                                            
                                                                                             68-MSE                                                                                                    175                                210-MSE                                                                                                                                                                                
                                                                                                                                                                                                                                           211-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF917] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2O3I)

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  Cis Peptide Bonds
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    Gly A:264 - Pro A:265   [ RasMol ]  
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