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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN AGR_C_3712 FROM AGROBACTERIUM TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ATR88.
 
Authors :  S. M. Vorobiev, M. Abashidze, J. Seetharaman, L. Zhao, L. C. Ma, K. Cunningham, C. Nwosu, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  21 Nov 06  (Deposition) - 05 Dec 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Agr_c_3712, Sspb, Stringent Starvation Protein B, Nesg, Atr88, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Vorobiev, M. Abashidze, J. Seetharaman, L. Zhao, L. C. Ma, K. Cunningham, C. Nwosu, T. B. Acton, R. Xiao, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein Agr_c_3712 From Agrobacterium Tumefaciens.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGR_C_3712P
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector: PET21
    Expression System Vector Type: PLASMID
    Gene: AGR_C3712
    Mutation: YES
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR. C58
    Organism Taxid: 176299
    Strain: C58-ATCC 33970

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NYS)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:117
 aligned with Q8U561_AGRFC | Q8U561 from UniProtKB/TrEMBL  Length:168

    Alignment length:117
                                    12        22        32        42        52        62        72        82        92       102       112       
         Q8U561_AGRFC     3 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVP 119
               SCOP domains d2nysa1 A:3-119 Uncharacterized protein AGR_C_3712p                                                                   SCOP domains
               CATH domains 2nysA00 A:3-119 Stringent starvation protein B, SspB                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee........hhhhhhhh..eeeeee....eeeee...eeeeeeee..eeeeeeee...eeeeeehhhheeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2nys A   3 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQmTIVIQHQFWDmKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVP 119
                                    12        22        32        42        52        62 |      72  |     82        92       102       112       
                                                                                        64-MSE     75-MSE                                        


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with Q8U561_AGRFC | Q8U561 from UniProtKB/TrEMBL  Length:168

    Alignment length:115
                                    13        23        33        43        53        63        73        83        93       103       113     
         Q8U561_AGRFC     4 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 118
               SCOP domains d2nysb_ B: Uncharacterized protein AGR_C_3712p                                                                      SCOP domains
               CATH domains 2nysB00 B:4-118 Stringent starvation protein B, SspB                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh...........eeeee........hhhhhh....eee.......eeeee...eeeee........eeeee...eeeeee....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2nys B   4 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQmTIVIQHQFWDmKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 118
                                    13        23        33        43        53        63|       73 |      83        93       103       113     
                                                                                       64-MSE     75-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

1ou8
1ox8 RELATED ID: ATR88 RELATED DB: TARGETDB