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(-) Description

Title :  SOLUTION STRUCTURE OF THE LINK MODULE OF HUMAN TSG-6 IN PRESENCE OF A CHONDROITIN 4-SULFATE HEXASACCHARIDE
 
Authors :  Y. Park, J. H. Prestegard
Date :  16 Jun 15  (Deposition) - 13 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Link Module, Tsg-6, Glycoprotein, Chondroitin Sulfate, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Park, T. A. Jowitt, A. J. Day, J. H. Prestegard
Nuclear Magnetic Resonance Insight Into The Multiple Glycosaminoglycan Binding Modes Of The Link Module From Human Tsg-6.
Biochemistry V. 55 262 2016
PubMed-ID: 26685054  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01148

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR-INDUCIBLE GENE 6 PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPRK172
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentLINK MODULE OF TSG-6, UNP RESIDUES 36-133
    GeneTNFAIP6, TSG6
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHYALURONATE-BINDING PROTEIN, TNF-STIMULATED GENE 6 PROTEIN, TSG-6, TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 6, TNF ALPHA- INDUCED PROTEIN 6

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N40)

(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:23 -A:92
2A:47 -A:68

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N40)

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:98
                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.........hhhhhhhhh........hhhhhhhhhh........eee...eee..............................eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  2n40 A  1 GVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGYPIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYNPHAK 98
                                    10        20        30        40        50        60        70        80        90        

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N40)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TSG6_HUMAN | P980661o7b 1o7c 2pf5 2wno

(-) Related Entries Specified in the PDB File

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