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(-) Description

Title :  STRUCTURE OF C-TERMINAL DOMAIN OF HUMAN POLYMERASE REV1 IN COMPLEX WITH POLD3 RIR-MOTIF
 
Authors :  Y. Pustovalova, D. Korzhnev
Date :  01 Apr 15  (Deposition) - 13 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Rev1, Pold3, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Pustovalova, M. T. Magalhaes, S. D'Souza, A. A. Rizzo, G. Korza, G. C. Walker, D. M. Korzhnev
Interaction Between The Rev1 C-Terminal Domain And The Pold Subunit Of Pol Zeta Suggests A Mechanism Of Polymerase Exchange Upon Rev1/Pol Zeta-Dependent Translesion Synthesis
Biochemistry V. 55 2043 2016
PubMed-ID: 26982350  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01282

(-) Compounds

Molecule 1 - DNA REPAIR PROTEIN REV1
    ChainsA
    EC Number2.7.7.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET28B+
    FragmentHREV1-CT, UNP RESIDUES 1158-1251
    GeneREV1, REV1L
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALPHA INTEGRIN-BINDING PROTEIN 80, AIBP80, REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE
 
Molecule 2 - DNA POLYMERASE DELTA SUBUNIT 3
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 231-246
    GeneKIAA0039, POLD3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDNA POLYMERASE DELTA SUBUNIT P66

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N1G)

(-) Sites  (0, 0)

(no "Site" information available for 2N1G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N1G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N1G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N1G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N1G)

(-) Exons   (0, 0)

(no "Exon" information available for 2N1G)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                2n1g A 1158 NLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT 1251
                                  1167      1177      1187      1197      1207      1217      1227      1237      1247    

Chain B from PDB  Type:PROTEIN  Length:16
                                                 
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ................ Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                2n1g B  231 KGNMMSNFFGKAAMNK  246
                                   240      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N1G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N1G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N1G)

(-) Gene Ontology  (29, 36)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPOD3_HUMAN | Q150541u76 3e0j
        REV1_HUMAN | Q9UBZ92ebw 2lsi 2lsk 2lsy 3gqc 3vu7 4ba9 4ext 4gk0 4gk5

(-) Related Entries Specified in the PDB File

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