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(-) Description

Title :  SOLUTION NMR STRUCTURE PLECTIN REPEAT DOMAIN 6 (4403-4606) OF PLECTIN FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR6354E
 
Authors :  S. Pulavarti, A. Eletsky, Y. Huang, H. Janjua, R. Xiao, T. Acton, J. Ever G. Montelione, T. Szyperski, Northeast Structural Genomics Cons (Nesg)
Date :  04 Mar 15  (Deposition) - 13 May 15  (Release) - 13 May 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Cytoskeletal-Linker Protein, Psi-Biology, Nesg, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Pulavarti, A. Eletsky, Y. Huang, H. Janjua, R. Xiao, T. Acton, J. Everett, G. Montelione, T. Szyperski
Solution Nmr Structure Plectin Repeat Domain 6 (4403-4606) Of Plectin From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr6354E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PLECTIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid469008
    Expression System VectorPET15_NESG
    FragmentRESIDUES 4403-4606
    GenePLEC, PLEC1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPCN, PLTN, HEMIDESMOSOMAL PROTEIN 1, HD1, PLECTIN-1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N03)

(-) Sites  (0, 0)

(no "Site" information available for 2N03)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N03)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N03)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N03)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N03)

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.6ENST000003228106ENSE00001244239chr8:145025044-145024352693PLEC_HUMAN1-1751750--
1.12ENST0000032281012ENSE00001742500chr8:145012860-14501279962PLEC_HUMAN175-195210--
1.14ENST0000032281014ENSE00001685326chr8:145012408-14501231990PLEC_HUMAN196-225300--
1.16ENST0000032281016ENSE00001316545chr8:145011410-14501133378PLEC_HUMAN226-251260--
1.17ENST0000032281017ENSE00001741875chr8:145011239-14501114793PLEC_HUMAN252-282310--
1.18cENST0000032281018cENSE00001244172chr8:145010182-145010016167PLEC_HUMAN283-338560--
1.19bENST0000032281019bENSE00001244165chr8:145009481-145009366116PLEC_HUMAN338-377400--
1.20bENST0000032281020bENSE00001244160chr8:145009285-145009179107PLEC_HUMAN377-412360--
1.21ENST0000032281021ENSE00001244151chr8:145009097-145008978120PLEC_HUMAN413-452400--
1.22ENST0000032281022ENSE00001244144chr8:145008898-14500880396PLEC_HUMAN453-484320--
1.23ENST0000032281023ENSE00001244136chr8:145008613-145008486128PLEC_HUMAN485-527430--
1.24ENST0000032281024ENSE00001244129chr8:145008259-14500816694PLEC_HUMAN527-558320--
1.25ENST0000032281025ENSE00001244123chr8:145007519-145007365155PLEC_HUMAN559-610520--
1.26ENST0000032281026ENSE00001301489chr8:145007279-145006961319PLEC_HUMAN610-7161070--
1.27ENST0000032281027ENSE00001244070chr8:145006880-14500680378PLEC_HUMAN717-742260--
1.28ENST0000032281028ENSE00002173555chr8:145006729-145006568162PLEC_HUMAN743-796540--
1.29ENST0000032281029ENSE00001244050chr8:145006402-145006298105PLEC_HUMAN797-831350--
1.30ENST0000032281030ENSE00001244041chr8:145006200-14500610596PLEC_HUMAN832-863320--
1.31ENST0000032281031ENSE00001244034chr8:145005827-145005702126PLEC_HUMAN864-905420--
1.32ENST0000032281032ENSE00001244024chr8:145004704-145004552153PLEC_HUMAN906-956510--
1.33ENST0000032281033ENSE00001244019chr8:145004466-145004312155PLEC_HUMAN957-1008520--
1.34ENST0000032281034ENSE00001244010chr8:145004230-145004104127PLEC_HUMAN1008-1050430--
1.35ENST0000032281035ENSE00001244001chr8:145003997-145003814184PLEC_HUMAN1051-1112620--
1.36ENST0000032281036ENSE00001315328chr8:145003739-145003582158PLEC_HUMAN1112-1164530--
1.37ENST0000032281037ENSE00001295392chr8:145003449-145003271179PLEC_HUMAN1165-1224600--
1.38ENST0000032281038ENSE00001319048chr8:145002160-145002022139PLEC_HUMAN1224-1270470--
1.39ENST0000032281039ENSE00001243956chr8:145001934-145001578357PLEC_HUMAN1271-13891190--
1.40ENST0000032281040ENSE00001243948chr8:145001503-14500142084PLEC_HUMAN1390-1417280--
1.41aENST0000032281041aENSE00001243936chr8:145001249-145001145105PLEC_HUMAN1418-1452350--
1.42ENST0000032281042ENSE00001243927chr8:145001050-14500095299PLEC_HUMAN1453-1485330--
1.43ENST0000032281043ENSE00001309447chr8:145000052-1449966723381PLEC_HUMAN1486-261211270--
1.44cENST0000032281044cENSE00001244232chr8:144996563-1449893217243PLEC_HUMAN2613-468420721A:4392-4606 (gaps)220

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with PLEC_HUMAN | Q15149 from UniProtKB/Swiss-Prot  Length:4684

    Alignment length:220
                                  4396      4406      4416      4426      4436      4446      4456      4466      4476      4486      4496      4506      4516      4526      4536      4546      4556      4566      4576      4586      4596      4606
          PLEC_HUMAN   4387 VGSSSSYPISPAVSRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTDAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVGAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQ 4606
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......-----..................eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhh............hhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhhh.ee......eehhhhhhhhh..hhhhhhhhhhhhhh.............hhhhhhhhhee......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.44c  PDB: A:4392-4606 (gaps) UniProt: 2613-4684 [INCOMPLETE]                                                                                                                                                          Transcript 1
                2n03 A 4392 MGHHHHH-----HSHMQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTDAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVGAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQ 4606
                                  |  -  |   4406      4416      4426      4436      4446      4456      4466      4476      4486      4496      4506      4516      4526      4536      4546      4556      4566      4576      4586      4596      4606
                               4398  4399                                                                                                                                                                                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N03)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N03)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N03)

(-) Gene Ontology  (20, 20)

NMR Structure(hide GO term definitions)
Chain A   (PLEC_HUMAN | Q15149)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0030506    ankyrin binding    Interacting selectively and non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins.
    GO:0008092    cytoskeletal protein binding    Interacting selectively and non-covalently with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
biological process
    GO:0031581    hemidesmosome assembly    Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina.
cellular component
    GO:0005903    brush border    The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0043292    contractile fiber    Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.
    GO:0043034    costamere    Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0030056    hemidesmosome    A cell-substrate junction (attachment structure) found in epithelial cells that links intermediate filaments to extracellular matrices via transmembrane complexes. In vertebrates, hemidesmosomes mediate contact between the basal side of epithelial cells and the basal lamina. In C. elegans, hemidesmosomes connect epithelial cells to distinct extracellular matrices on both the apical and basal cell surfaces.
    GO:0045111    intermediate filament cytoskeleton    Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.
    GO:0016528    sarcoplasm    The cytoplasm of a muscle cell; includes the sarcoplasmic reticulum.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLEC_HUMAN | Q151491mb8 2odu 2odv 3f7p 3pdy 3pe0 4gdo 4q58 4q59 5j1f 5j1g 5j1h 5j1i

(-) Related Entries Specified in the PDB File

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