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(-) Description

Title :  TRANSIENT COLLAGEN TRIPLE HELIX BINDING TO A KEY METALLOPROTEINASE IN INVASION AND DEVELOPMENT: SPIN LABELS TO STRUCTURE
 
Authors :  Y. Zhao, T. Marcink, S. R. Van Doren
Date :  26 Jun 14  (Deposition) - 11 Feb 15  (Release) - 11 Feb 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D  (15x)
NMR Structure *:  A,B,C,D  (1x)
Keywords :  Protein/Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Zhao, T. C. Marcink, R. Stawikowska, R. R Sanganna Gari, B. P. Marsh, G. M. King, G. B. Fields, S. R. Van Doren
Transient Collagen Triple Helix Binding To A Key Metalloproteinase In Invasion And Development
Structure V. 23 257 2015
PubMed: search

(-) Compounds

Molecule 1 - MATRIX METALLOPROTEINASE-14
    ChainsA
    EC Number3.4.24.80
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPET-27B(+)
    GeneMMP14
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMMP-14, MMP-X1, MEMBRANE-TYPE MATRIX METALLOPROTEINASE 1, MT-MMP 1, MTMMP1, MEMBRANE-TYPE-1 MATRIX METALLOPROTEINASE, MT1-MMP, MT1MMP
 
Molecule 2 - THP_L_AND_M_CHAIN
    ChainsB, C
    EngineeredYES
    Other DetailsTHE PEPTIDE IS DERIVED FROM A SEQUENCE REGION WITHIN HUMAN COLLAGENS I, II, AND III
    SyntheticYES
 
Molecule 3 - THP_T_CHAIN
    ChainsD
    EngineeredYES
    Other DetailsTHE PEPTIDE IS DERIVED FROM A SEQUENCE REGION WITHIN HUMAN COLLAGENS I, II, AND III
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
NMR Structure (15x)ABCD
NMR Structure * (1x)ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 23)

NMR Structure (1, 23)
No.NameCountTypeFull Name
1HYP23Mod. Amino Acid4-HYDROXYPROLINE
NMR Structure * (1, 23)
No.NameCountTypeFull Name
1HYP23Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 2MQS)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:319 -A:508

(-) Cis Peptide Bonds  (4, 60)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Tyr A:353 -Pro A:354
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Tyr A:399 -Pro A:400
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Tyr A:449 -Pro A:450
41, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Tyr A:497 -Pro A:498

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MQS)

(-) PROSITE Motifs  (2, 5)

NMR Structure (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HEMOPEXIN_2PS51642 Hemopexin repeat profile.MMP14_HUMAN316-364
365-410
412-460
461-508
  4A:316-364
A:365-410
A:412-460
A:461-508
2HEMOPEXINPS00024 Hemopexin domain signature.MMP14_HUMAN357-372  1A:357-372
NMR Structure * (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HEMOPEXIN_2PS51642 Hemopexin repeat profile.MMP14_HUMAN316-364
365-410
412-460
461-508
  4A:316-364
A:365-410
A:412-460
A:461-508
2HEMOPEXINPS00024 Hemopexin domain signature.MMP14_HUMAN357-372  1A:357-372

(-) Exons   (0, 0)

(no "Exon" information available for 2MQS)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...eeeee..eeeeee..eeeeee..ee.....eehhhhh........eeee.....eeeee..eeeeee..ee.....eehhhhh.........eeeee....eeeeee..eeeeee....ee.....ee.hhh.........eee.....eeeeee..eeeeee....ee.....eehhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mqs A 316 PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSG 511
                                   325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505      

Chain B from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 2mqs B   0 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPpGPp  35
                              |  |  |9        19   |  | 29  |  |
                              2-HYP |             23-HYP |  |  |
                                 5-HYP               26-HYP |  |
                                    8-HYP               29-HYP |
                                                           32-HYP
                                                              35-HYP

Chain C from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 2mqs C 100 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPpGPp 135
                              |  | 109       119   |  |129  |  |
                              |  |  |            123-HYP |  |  |
                            102-HYP |               126-HYP |  |
                               105-HYP                 129-HYP |
                                  108-HYP                 132-HYP
                                                             135-HYP

Chain D from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 2mqs D 200 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPp 232
                              |  | 209       219   |  |229  |
                              |  |  |            223-HYP |  |
                            202-HYP |               226-HYP |
                               205-HYP                 229-HYP
                                  208-HYP                 232-HYP

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MQS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MQS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MQS)

(-) Gene Ontology  (55, 55)

NMR Structure(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:353 - Pro A:354   [ RasMol ]  
    Tyr A:399 - Pro A:400   [ RasMol ]  
    Tyr A:449 - Pro A:450   [ RasMol ]  
    Tyr A:497 - Pro A:498   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMP14_HUMAN | P502811bqq 1buv 3c7x 3ma2 3x23 4p3c 4p3d 4qxu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2MQS)