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(-) Description

Title :  BACKBONE STRUCTURE OF HUMAN MEMBRANE PROTEIN TMEM14C
 
Authors :  C. Klammt, N. Vajpai, I. Maslennikov, R. Riek, S. Choe
Date :  26 Jan 12  (Deposition) - 23 May 12  (Release) - 15 Aug 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Membrane Protein, Paramagnetic Relaxation Enhancement, Helical Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Klammt, I. Maslennikov, M. Bayrhuber, C. Eichmann, N. Vajpai, E. J. Chiu, K. Y. Blain, L. Esquivies, J. H. Kwon, B. Balana, U. Pieper, A. Sali, P. A. Slesinger, W. Kwiatkowski, R. Riek, S. Choe
Facile Backbone Structure Determination Of Human Membrane Proteins By Nmr Spectroscopy.
Nat. Methods V. 9 834 2012
PubMed-ID: 22609626  |  Reference-DOI: 10.1038/NMETH.2033

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 14C
    ChainsA
    EngineeredYES
    Expression SystemCELL-FREE SYNTHESIS
    Expression System VectorP23-GWN
    GeneTMEM14C, C6ORF53, HSPC194
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LOS)

(-) Sites  (0, 0)

(no "Site" information available for 2LOS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LOS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LOS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 4)

NMR Structure (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_046947S106RTM14C_HUMANPolymorphism1045961AS106R
2UniProtVAR_046948F108LTM14C_HUMANPolymorphism1045964AF108L
3UniProtVAR_046949N109ITM14C_HUMANPolymorphism1045967AN109I
4UniProtVAR_046950H112DTM14C_HUMANPolymorphism1045986AH112D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
NMR Structure * (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_046947S106RTM14C_HUMANPolymorphism1045961AS106R
2UniProtVAR_046948F108LTM14C_HUMANPolymorphism1045964AF108L
3UniProtVAR_046949N109ITM14C_HUMANPolymorphism1045967AN109I
4UniProtVAR_046950H112DTM14C_HUMANPolymorphism1045986AH112D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LOS)

(-) Exons   (0, 0)

(no "Exon" information available for 2LOS)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with TM14C_HUMAN | Q9P0S9 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:112
                                    10        20        30        40        50        60        70        80        90       100       110  
          TM14C_HUMAN     1 MQDTGSVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNRPH 112
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------R-LI--D SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2los A   1 MQDTSSVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNRPH 112
                                    10        20        30        40        50        60        70        80        90       100       110  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LOS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LOS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LOS)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (TM14C_HUMAN | Q9P0S9)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006783    heme biosynthetic process    The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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2lom 2lon 2loo 2lop 2loq 2lor