2K7E - JenaLib

Title :   NMR STRUCTURE OF THE HUMAN TRNALYS3 BOUND TO THE HIV GENOME LOOP I

Authors :   Y. Bilbille, F. P. A. Vendeix, R. Guenther, A. Malkiewicz, X. Ariza, J. Vilarrasa, P. Agris

Date :   09 Aug 08 (Deposition) - 07 Oct 08 (Release) - 02 Feb 10 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (10x)

Keywords :   Rna, Trnalys3, Pseudouridine, Hiv, 2-Thiouridine, S2U, Psu, Modifications (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Bilbille, F. A. Vendeix, R. Guenther, A. Malkiewicz, X. Ariza, J. Vilarrasa, P. F. Agris
The Structure Of The Human Trnalys3 Anticodon Bound To The Hiv Genome Is Stabilized By Modified Nucleosides And Adjacent Mismatch Base Pairs.
Nucleic Acids Res. V. 37 3342 2009
PubMed-ID: 19324888 | Reference-DOI: 10.1093/NAR/GKP187

Compounds

*Molecule 1 - RNA (5'-R(GPCPGPGPUPGPUPAPAPAPAPG)- 3')*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	HIV A-LOOP
	Synthetic	:	YES

*Molecule 2 - RNA (5'-R(CPUP(SUR)PUPUPAPAP(PSU) PCPUPGPC)-3')*
	Chains	:	B
	Engineered	:	YES
	Other Details	:	TRNALYS3 ASL
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:12
                                           
                  2k7e A  1 GCGGUGUAAAAG 12
                                    10

Chain B from PDB  Type:RNA  Length:12
                                           
                  2k7e B  1 CUuUUAAuCUGC 12
                              |    |10  
                              3-SUR|    
                                   8-PSU

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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