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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PUTATIVE CARBOHYDRATE RECOGNITION DOMAIN OF THE HUMAN GALECTIN-RELATED PROTEIN
 
Authors :  S. Thore, M. A. Walti, M. Kunzler, M. Aebi
Date :  18 Mar 08  (Deposition) - 06 May 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sugar-Binding Protein, Human, Galectin, Carbohydrate Recognition Domain Sugar-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Walti, S. Thore, M. Kunzler, M. Aebi
Crystal Structure Of The Putative Carbohydrate Recognition Domain Of Human Galectin-Related Protein
Proteins: Struct. , Funct. , V. 72 804 2008 Bioinf.
PubMed-ID: 18433051  |  Reference-DOI: 10.1002/PROT.22078

(-) Compounds

Molecule 1 - GALECTIN-RELATED PROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCARBOHYDRATE RECOGNITION DOMAIN, RESIDUES 38-171
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JJ6)

(-) Sites  (0, 0)

(no "Site" information available for 2JJ6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JJ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JJ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JJ6)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEGL_HUMAN40-172
 
  2A:3-134
B:3-134
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEGL_HUMAN40-172
 
  1A:3-134
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEGL_HUMAN40-172
 
  1-
B:3-134

(-) Exons   (0, 0)

(no "Exon" information available for 2JJ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:134
 aligned with LEGL_HUMAN | Q3ZCW2 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:134
                                    47        57        67        77        87        97       107       117       127       137       147       157       167    
           LEGL_HUMAN    38 VPFCGHIKGGMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDLQITKL 171
               SCOP domains d2jj6a_ A: automated matches                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee.....eeeeeee..........eeeeeeee....eeeeeeee..ee................eeeeeeee...eeeeee..eeeeeee....hhhhh.eeeeee.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GALECTIN  PDB: A:3-134 UniProt: 40-172                                                                                               PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jj6 A   1 VPFCGHIKGGMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDLQITKL 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    

Chain B from PDB  Type:PROTEIN  Length:133
 aligned with LEGL_HUMAN | Q3ZCW2 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:133
                                    48        58        68        78        88        98       108       118       128       138       148       158       168   
           LEGL_HUMAN    39 PFCGHIKGGMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDLQITKL 171
               SCOP domains d2jj6b_ B: automated matches                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.........eeeeeeee.....eeeeeee..........eeeeeeee....eeeeeeee..ee................eeeeeeee...eeeeee..eeeeeee....hhhhh.eeeeee.eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GALECTIN  PDB: B:3-134 UniProt: 40-172                                                                                               PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jj6 B   2 PFCGHIKGGMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDLQITKL 134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131   

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JJ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JJ6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (LEGL_HUMAN | Q3ZCW2)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

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UniProtKB/Swiss-Prot
        LEGL_HUMAN | Q3ZCW23b9c

(-) Related Entries Specified in the PDB File

2vmm CRYSTAL STRUCTURE OF THE PUTATIVE CARBOHYDRATE RECOGNITION DOMAIN OF THE HUMAN GALECTIN- RELATED PROTEIN