2GJ3 - JenaLib

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	EOH	1	Ligand/Ion	ETHANOL
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	EOH	1	Ligand/Ion	ETHANOL
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 42)

No.	Name	Count	Type	Full Name
1	EOH	6	Ligand/Ion	ETHANOL
2	FAD	12	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	24	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 21)

No.	Name	Count	Type	Full Name
1	EOH	3	Ligand/Ion	ETHANOL
2	FAD	6	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 21)

No.	Name	Count	Type	Full Name
1	EOH	3	Ligand/Ion	ETHANOL
2	FAD	6	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 5 (3, 14)

No.	Name	Count	Type	Full Name
1	EOH	2	Ligand/Ion	ETHANOL
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 6 (3, 14)

No.	Name	Count	Type	Full Name
1	EOH	2	Ligand/Ion	ETHANOL
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	SO4	8	Ligand/Ion	SULFATE ION

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:55 , GLY A:61 , SER A:62 , HOH A:702 , HOH A:736 , HOH A:752 , HOH A:842	BINDING SITE FOR RESIDUE SO4 A 623
2	AC2	SOFTWARE	ARG A:89 , GLN A:92 , LYS A:94 , LYS A:107 , SO4 A:626 , HOH A:694	BINDING SITE FOR RESIDUE SO4 A 624
3	AC3	SOFTWARE	ASN B:121 , GLU B:122 , HOH B:631 , HOH B:653	BINDING SITE FOR RESIDUE SO4 B 625
4	AC4	SOFTWARE	ARG A:89 , LYS A:94 , LYS A:107 , SO4 A:624 , HOH A:683	BINDING SITE FOR RESIDUE SO4 A 626
5	AC5	SOFTWARE	LYS A:44 , ALA A:45 , ASN A:69 , GLU A:70 , SER A:71 , LEU A:73 , SER A:74 , ARG A:80 , TYR A:83 , TRP A:87 , ALA A:91 , LYS A:93 , ASN A:102 , LEU A:114 , VAL A:116 , GLU A:125 , HOH A:635 , HOH A:636 , HOH A:661 , HOH A:662 , HOH A:666 , HOH A:685 , HOH A:706 , HOH A:707 , HOH A:708 , HOH A:710 , HOH A:738 , HOH A:741 , HOH A:810	BINDING SITE FOR RESIDUE FAD A 500
6	AC6	SOFTWARE	LYS B:44 , ALA B:45 , ASN B:69 , GLU B:70 , SER B:71 , LEU B:73 , SER B:74 , ARG B:80 , TYR B:83 , GLN B:84 , TRP B:87 , ASN B:102 , LEU B:114 , HOH B:638 , HOH B:646 , HOH B:657 , HOH B:667 , HOH B:678 , HOH B:695 , HOH B:704 , HOH B:721 , HOH B:736 , HOH B:737	BINDING SITE FOR RESIDUE FAD B 501
7	AC7	SOFTWARE	HIS B:33 , HOH B:647 , HOH B:697	BINDING SITE FOR RESIDUE EOH B 416

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	2	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	2	A:94-140 B:94-139

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	2	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	2	A:94-140 B:94-139

Biological Unit 2 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	12	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	12	A:94-140 B:94-139

Biological Unit 3 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	6	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	6	A:94-140 B:94-139

Biological Unit 4 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	6	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	6	A:94-140 B:94-139

Biological Unit 5 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	4	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	4	A:94-140 B:94-139

Biological Unit 6 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PAS	PS50112	PAS repeat profile.	NIFL_AZOVI	23-69	4	A:23-69 B:23-69
2	PAC	PS50113	PAC domain profile.	NIFL_AZOVI	94-148	4	A:94-140 B:94-139

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:119
 aligned with NIFL_AZOVI | P30663 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:119
                                    31        41        51        61        71        81        91       101       111       121       131         
           NIFL_AZOVI    22 LLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 140
               SCOP domains d2gj3a_ A: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -PAS  PDB: A:23-69 UniProt: 23-69               ------------------------PAC  PDB: A:94-140 UniProt: 94-148              PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2gj3 A  22 LLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 140
                                    31        41        51        61        71        81        91       101       111       121       131

Chain B from PDB  Type:PROTEIN  Length:119
 aligned with NIFL_AZOVI | P30663 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:119
                                    30        40        50        60        70        80        90       100       110       120       130         
           NIFL_AZOVI    21 ELLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 139
               SCOP domains d2gj3b_ B: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh..eeeee.....eeeehhhhhhhhh.........hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --PAS  PDB: B:23-69 UniProt: 23-69               ------------------------PAC  PDB: B:94-139 UniProt: 94-148             PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2gj3 B  21 ELLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 139
                                    30        40        50        60        70        80        90       100       110       120       130

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (18, 18)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NIFL_AZOVI | P30663)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0000155	phosphorelay sensor kinase activity	Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
	GO:0004673	protein histidine kinase activity	Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016772	transferase activity, transferring phosphorus-containing groups	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
	GO:0009399	nitrogen fixation	The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.
	GO:0018106	peptidyl-histidine phosphorylation	The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
	GO:0000160	phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0023014	signal transduction by protein phosphorylation	A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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		Biological Unit 6	[ Jena3D ]

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	2gj3
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	2.7.13.3
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)