2G32 | UR0077 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN RNA RACEMATE

Authors :   W. Rypniewski, M. Vallazza, M. Perbandt, S. Klussmann, C. Betzel, V. A.

Date :   17 Feb 06 (Deposition) - 30 May 06 (Release) - 28 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : K,L,M,N  (2x)
Biol. Unit 1: K,L  (1x)
Biol. Unit 2: M,N  (1x)

Keywords :   Double Helix, Racemate, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Rypniewski, M. Vallazza, M. Perbandt, S. Klussmann, L. J. Delucas, C. Betzel, V. A. Erdmann
The First Crystal Structure Of An Rna Racemate.
Acta Crystallogr. , Sect. D V. 62 659 2006
PubMed-ID: 16699193 | Reference-DOI: 10.1107/S090744490601359X

Compounds

*Molecule 1 - RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))- 3')*
	Chains	:	K, M
	Engineered	:	YES
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Synthetic	:	YES

*Molecule 2 - RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))- 3')*
	Chains	:	L, N
	Engineered	:	YES
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 45)

Asymmetric Unit (5, 45)

No.	Name	Count	Type	Full Name
1	0C	12	Mod. Residue	L-CYTIDINE-5'-MONOPHOSPHATE
2	0G	16	Mod. Residue	L-GUANOSINE-5'-MONOPHOSPHATE
3	0U	4	Mod. Residue	L-URIDINE-5'-MONOPHOSPHATE
4	CA	12	Ligand/Ion	CALCIUM ION
5	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	0C	-1	Mod. Residue	L-CYTIDINE-5'-MONOPHOSPHATE
2	0G	-1	Mod. Residue	L-GUANOSINE-5'-MONOPHOSPHATE
3	0U	-1	Mod. Residue	L-URIDINE-5'-MONOPHOSPHATE
4	CA	-1	Ligand/Ion	CALCIUM ION
5	GOL	-1	Ligand/Ion	GLYCEROL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	0C	-1	Mod. Residue	L-CYTIDINE-5'-MONOPHOSPHATE
2	0G	-1	Mod. Residue	L-GUANOSINE-5'-MONOPHOSPHATE
3	0U	-1	Mod. Residue	L-URIDINE-5'-MONOPHOSPHATE
4	CA	-1	Ligand/Ion	CALCIUM ION
5	GOL	1	Ligand/Ion	GLYCEROL

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH N:6 , HOH N:8 , HOH N:18 , HOH N:21 , HOH N:34 , HOH N:108 , HOH N:125 , HOH N:257 , CA N:304	BINDING SITE FOR RESIDUE CA N 302
2	AC2	SOFTWARE	HOH N:8 , HOH N:18 , HOH N:21 , HOH N:31 , 0G N:96 , HOH N:122 , HOH N:145 , HOH N:257 , CA N:302	BINDING SITE FOR RESIDUE CA N 304
3	AC3	SOFTWARE	HOH K:41 , HOH N:39 , HOH N:43 , HOH N:48 , HOH N:63 , 0G N:97 , HOH N:99	BINDING SITE FOR RESIDUE CA N 306
4	AC4	SOFTWARE	HOH M:30 , HOH M:44 , HOH M:45 , HOH M:60 , 0G M:86 , HOH M:87 , HOH M:121	BINDING SITE FOR RESIDUE CA M 308
5	AC5	SOFTWARE	HOH L:56 , 0G L:97 , HOH L:98 , HOH L:104 , HOH L:223 , HOH M:74 , HOH M:110	BINDING SITE FOR RESIDUE CA L 310
6	AC6	SOFTWARE	HOH M:7 , HOH M:37 , 0G M:82 , HOH M:103 , HOH M:193	BINDING SITE FOR RESIDUE CA M 311
7	AC7	SOFTWARE	0G K:85 , 0G K:86 , 0C L:91 , HOH M:14 , 0G M:85 , 0G N:92 , 0C N:93 , HOH N:188	BINDING SITE FOR RESIDUE GOL N 301

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain K from PDB  Type:OTHER  Length:8
                                       
                  2g32 K 79 xxxxxxxx 86
                            ||||||||
                            ||||||||
                           79-0C||||
                            80-0U|||
                             81-0G||
                              82-0G|
                               83-0G
                                84-0C
                                 85-0G
                                  86-0G

Chain L from PDB  Type:OTHER  Length:8
                                       
                  2g32 L 90 xxxxxxxx 97
                            ||||||||
                            ||||||||
                           90-0C||||
                            91-0C|||
                             92-0G||
                              93-0C|
                               94-0C
                                95-0U
                                 96-0G
                                  97-0G

Chain M from PDB  Type:OTHER  Length:8
                                       
                  2g32 M 79 xxxxxxxx 86
                            ||||||||
                            ||||||||
                           79-0C||||
                            80-0U|||
                             81-0G||
                              82-0G|
                               83-0G
                                84-0C
                                 85-0G
                                  86-0G

Chain N from PDB  Type:OTHER  Length:8
                                       
                  2g32 N 90 xxxxxxxx 97
                            ||||||||
                            ||||||||
                           90-0C||||
                            91-0C|||
                             92-0G||
                              93-0C|
                               94-0C
                                95-0U
                                 96-0G
                                  97-0G

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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