2EWG - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   T. BRUCEI FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED WITH MINODRONATE

Authors :   R. Cao, J. Mao, Y. Gao, H. Robinson, S. Odeh, A. Goddard, E. Oldfield

Date :   03 Nov 05 (Deposition) - 31 Oct 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.48

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (2x),B (2x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)

Keywords :   Protein-Bisphosphonate Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Mao, S. Mukherjee, Y. Zhang, R. Cao, J. M. Sanders, Y. Song, Y. Zhang, G. A. Meints, Y. G. Gao, D. Mukkamala, M. P. Hudock, E. Oldfield
Solid-State Nmr, Crystallographic, And Computational Investigation Of Bisphosphonates And Farnesyl Diphosphate Synthase-Bisphosphonate Complexes.
J. Am. Chem. Soc. V. 128 14485 2006
PubMed-ID: 17090032 | Reference-DOI: 10.1021/JA061737C

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE
	Chains	:	A, B
	EC Number	:	2.5.1.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	TRYPANOSOMA BRUCEI
	Organism Taxid	:	5691

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A (2x)	B (2x)
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	M0N	2	Ligand/Ion	(1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
2	MG	6	Ligand/Ion	MAGNESIUM ION
3	PGO	3	Ligand/Ion	S-1,2-PROPANEDIOL

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	M0N	2	Ligand/Ion	(1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PGO	3	Ligand/Ion	S-1,2-PROPANEDIOL

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	M0N	2	Ligand/Ion	(1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PGO	4	Ligand/Ion	S-1,2-PROPANEDIOL

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	M0N	1	Ligand/Ion	(1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PGO	2	Ligand/Ion	S-1,2-PROPANEDIOL

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	M0N	1	Ligand/Ion	(1-HYDROXY-2-IMIDAZO[1,2-A]PYRIDIN-3-YLETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PGO	1	Ligand/Ion	S-1,2-PROPANEDIOL

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:103 , ASP A:107 , M0N A:3001 , MG A:3003 , HOH A:6001 , HOH A:6326	BINDING SITE FOR RESIDUE MG A 3002
02	AC2	SOFTWARE	ASP A:103 , ASP A:107 , M0N A:3001 , MG A:3002 , HOH A:6009	BINDING SITE FOR RESIDUE MG A 3003
03	AC3	SOFTWARE	ASP A:255 , M0N A:3001 , HOH A:6002 , HOH A:6003 , HOH A:6132	BINDING SITE FOR RESIDUE MG A 3004
04	AC4	SOFTWARE	ASP B:103 , ASP B:107 , SER B:109 , M0N B:4001 , HOH B:6004 , HOH B:6006	BINDING SITE FOR RESIDUE MG B 4002
05	AC5	SOFTWARE	ASP B:255 , ASP B:259 , ASP B:273 , M0N B:4001 , HOH B:6008 , HOH B:6325	BINDING SITE FOR RESIDUE MG B 4003
06	AC6	SOFTWARE	ASP B:103 , ASP B:107 , M0N B:4001 , HOH B:6005 , HOH B:6007 , HOH B:6010	BINDING SITE FOR RESIDUE MG B 4004
07	AC7	SOFTWARE	TYR A:99 , ASP A:103 , ASP A:107 , ARG A:112 , THR A:168 , GLN A:172 , LYS A:212 , THR A:213 , TYR A:216 , GLN A:252 , ASP A:255 , LYS A:269 , MG A:3002 , MG A:3003 , MG A:3004 , HOH A:6001 , HOH A:6002 , HOH A:6003 , HOH A:6009 , HOH A:6229 , HOH A:6249 , HOH A:6326	BINDING SITE FOR RESIDUE M0N A 3001
08	AC8	SOFTWARE	TYR B:99 , ASP B:103 , ASP B:107 , ARG B:112 , THR B:168 , GLN B:172 , LYS B:212 , THR B:213 , GLN B:252 , ASP B:255 , LYS B:269 , MG B:4002 , MG B:4003 , MG B:4004 , HOH B:6005 , HOH B:6006 , HOH B:6008 , HOH B:6010 , HOH B:6040 , HOH B:6071 , HOH B:6177	BINDING SITE FOR RESIDUE M0N B 4001
09	AC9	SOFTWARE	HIS B:83 , HOH B:6289	BINDING SITE FOR RESIDUE PGO B 5001
10	BC1	SOFTWARE	ARG A:80	BINDING SITE FOR RESIDUE PGO A 5002

(no "SS Bond" information available for 2EWG)

(no "Cis Peptide Bond" information available for 2EWG)

(no "SAP(SNP)/Variant" information available for 2EWG)

(no "PROSITE Motif" information available for 2EWG)

(no "Exon" information available for 2EWG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:367
 aligned with Q86C09_9TRYP | Q86C09 from UniProtKB/TrEMBL  Length:367

    Alignment length:367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       
         Q86C09_9TRYP     1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
               SCOP domains d2ewga_ A: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2ewgA00 A:1-367 Farnesyl Diphosphate Synthase                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ewg A   1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with Q86C09_9TRYP | Q86C09 from UniProtKB/TrEMBL  Length:367

    Alignment length:367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       
         Q86C09_9TRYP     1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
               SCOP domains d2ewgb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2ewgB00 B:1-367 Farnesyl Diphosphate Synthase                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ewg B   1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Terpenoid synthases (196)

Superfamily: Terpenoid synthases (196)

Family: automated matches (68)

Protein domain: automated matches (68)

Trypanosome (Trypanosoma brucei) [TaxId: 5691] (9)

1a	d2ewga_	A:
1b	d2ewgb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Farnesyl Diphosphate Synthase (109)

Homologous Superfamily: Farnesyl Diphosphate Synthase (109)

Trypanosoma brucei. Organism_taxid: 5691. (9)

1a	2ewgA00	A:1-367
1b	2ewgB00	B:1-367

(no "Pfam Domain" information available for 2EWG)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q86C09_9TRYP | Q86C09)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Asymmetric Unit
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	2ewg
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Description

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Ligands, Modified Residues, Ions (3, 11)

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