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(-) Description

Title :  SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 141
 
Authors :  K. Miyamoto, N. Tochio, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  13 Feb 07  (Deposition) - 14 Aug 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ring Finger Protein 141, Rnf141, Ring Domain, Zinc-Binding Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Miyamoto, N. Tochio, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RING FINGER PROTEIN 141
    Chains: A
    Engineered: YES
    Expression System Plasmid: P060919-15
    Expression System Vector Type: PLASMID
    Fragment: RING DOMAIN
    Gene: RNF141, ZNF230
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: ZINC FINGER PROTEIN 230

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , CYS A:37 , CYS A:40BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:32 , HIS A:34 , CYS A:51 , CYS A:54BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ECN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ECN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ECN)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_RING_2PS50089 Zinc finger RING-type profile.RN141_HUMAN155-192  1A:18-55
2ZF_RING_1PS00518 Zinc finger RING-type signature.RN141_HUMAN169-178  1A:32-41

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002659811bENSE00002171319chr11:10562764-1056266996RN141_HUMAN-00--
1.3ENST000002659813ENSE00000911009chr11:10555752-10555563190RN141_HUMAN1-48480--
1.5ENST000002659815ENSE00000911008chr11:10552298-10552190109RN141_HUMAN48-84370--
1.6ENST000002659816ENSE00000911007chr11:10546920-10546739182RN141_HUMAN85-145611A:1-8 (gaps)27
1.7aENST000002659817aENSE00002201824chr11:10540688-10540581108RN141_HUMAN145-181371A:8-4437
1.8bENST000002659818bENSE00000889988chr11:10536613-105332253389RN141_HUMAN181-230501A:44-70 (gaps)31

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:70
 aligned with RN141_HUMAN | Q8WVD5 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:93
                                   128       138       148       158       168       178       188       198       208   
          RN141_HUMAN   119 AQSSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPTED 211
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-------------------.....................eee...eeehhhhhhhh......hhhhhhh......----....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------ZF_RING_2  PDB: A:18-55               ------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------ZF_RING_1 --------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.6  PDB: A:1-8 (gaps)-----------------------------------Exon 1.8b  PDB: A:44-70 (gaps)  Transcript 1 (1)
           Transcript 1 (2) --------------------------Exon 1.7a  PDB: A:8-44               ------------------------------ Transcript 1 (2)
                 2ecn A   1 GSSGSS-------------------GRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE----SSGPSSG  70
                                 |   -         -     |  11        21        31        41        51        61 |    | 67   
                                 6                   7                                                      63   64
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ECN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ECN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ECN)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (RN141_HUMAN | Q8WVD5)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051865    protein autoubiquitination    The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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