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Theoretical Model (Jmol Viewer)

Title :   COMPLEX MODEL OF HUMAN ARYLAMINE N-ACETYLTRANSFERASE 1 WITH ITS SUBSTRATE PABA

Authors :   N. Zhang, L. Liu, F. Liu, C. R. Wagner, P. E. Hanna, K. J. Walters

Date :   06 Jul 06 (Deposition) - 05 Sep 06 (Release) - 05 Sep 06 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : _  (10x)

Keywords :   Alpha-Helix Beta-Sheet Scaffold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Zhang, L. Liu, F. Liu, C. R. Wagner, P. E. Hanna, K. J. Walters
Nmr-Based Model Reveals The Structural Determinants Of Mammalian Arylamine N-Acetyltransferase Substrate Specificity
J. Mol. Biol. 2006
PubMed: search
(for further references see the PDB file header)

Molecule 1 - HUMAN ARYLAMINE N-ACETYLTRANSFERASE 1
	Chains	:	_
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Common	:	BACTERIA
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS


Theoretical Model (10x)	:

Summary Information (see also Sequences/Alignments below)

Theoretical Model (1, 1)

No.	Name	Count	Type	Full Name
1	DRG	1	Ligand/Ion	5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE

(no "Site" information available for 2DSS)

(no "SS Bond" information available for 2DSS)

(no "Cis Peptide Bond" information available for 2DSS)

Theoretical Model (10, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_004606	R	64	W	ARY1_HUMAN	Polymorphism	56379106	_	R	64	W
02	UniProt	VAR_009510	R	117	T	ARY1_HUMAN	Polymorphism	55641436	_	R	117	T
03	UniProt	VAR_004607	V	149	I	ARY1_HUMAN	Polymorphism	4987076	_	V	149	I
04	UniProt	VAR_009069	R	187	Q	ARY1_HUMAN	Polymorphism	4986782	_	R	187	Q
05	UniProt	VAR_009070	M	205	V	ARY1_HUMAN	Polymorphism	72554609	_	M	205	V
06	UniProt	VAR_020384	T	207	I	ARY1_HUMAN	Polymorphism	4987195	_	T	207	I
07	UniProt	VAR_009071	S	214	A	ARY1_HUMAN	Polymorphism	4986783	_	S	214	A
08	UniProt	VAR_009072	D	251	V	ARY1_HUMAN	Polymorphism	56172717	_	D	251	V
09	UniProt	VAR_009073	E	261	K	ARY1_HUMAN	Polymorphism	72554610	_	E	261	K
10	UniProt	VAR_009074	I	263	V	ARY1_HUMAN	Polymorphism	72554611	_	I	263	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2DSS)

Theoretical Model (1, 1)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.4a	ENST00000307719	4a	ENSE00001354189	chr8:18067602-18067689	88	ARY1_HUMAN	-	0	0	-	-
1.8	ENST00000307719	8	ENSE00001146057	chr8:18076920-18076998	79	ARY1_HUMAN	-	0	0	-	-
1.9e	ENST00000307719	9e	ENSE00001308408	chr8:18079551-18081198	1648	ARY1_HUMAN	1-292	292	1	_:1-290	290

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain _ from PDB  Type:PROTEIN  Length:290
 aligned with ARY1_HUMAN | P18440 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
           ARY1_HUMAN     1 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDLLEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI 290
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.........hhhhhhhhhhhhhhhh.eehhhhhh......hhhhhhhhhh......hhhhhhhhhhhhhhhhh..eeeeeeee.........eeeeeeeeeee....eeee.............ee.....ee......eeeee....eeeeeee...................eeeeeeeeeeee.hhhhhhhhhhhhhhh..hhhhhh..ee.......eeee..eeee.........eee......hhhhhhhhhhh....hhhhh..hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------W----------------------------------------------------T-------------------------------I-------------------------------------Q-----------------V-I------A------------------------------------V---------K-V--------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.9e  PDB: - UniProt: 1-292                                                                                                                                                                                                                                                                   Transcript 1
                 2dss _   1 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDLLEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI 290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2DSS)

(no "CATH Domain" information available for 2DSS)

(no "Pfam Domain" information available for 2DSS)

Theoretical Model(hide GO term definitions)

Chain (ARY1_HUMAN | P18440)

molecular function
	GO:0016407	acetyltransferase activity	Catalysis of the transfer of an acetyl group to an acceptor molecule.
	GO:0004060	arylamine N-acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Theoretical Model
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(no "Cis Peptide Bonds" information available for 2dss)

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	ARY1_HUMAN \| P18440	:	2gwu 2ija 2pqt

1e2t	CRYSTAL STRUCTURE OF ARYLAMINE N-ACETYLTRANSFERASE (NAT) FROM SALMONELLA TYPHIMURIUM
1gx3	CRYSTAL STRUCTURE OF M. SMEGMATIS ARYLAMINE N- ACETYLTRANSFERASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (10, 10)

PROSITE Motifs (0, 0)

Exons (1, 1)

Sequences/Alignments

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Gene Ontology (8, 8)

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