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(-) Description

Title :  SOLUTION STRUCTURE OF THE FILAMIN DOMAIN FROM HUMAN TRIPARTITE MOTIF PROTEIN 45
 
Authors :  T. Tomizawa, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  21 Jun 06  (Deposition) - 21 Dec 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Beta-Sandwich, Immunoglobulin-Like Fold, Filamin Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Tomizawa, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Filamin Domain From Human Tripartite Motif Protein 45
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRIPARTITE MOTIF PROTEIN 45
    ChainsA
    EngineeredYES
    Expression System PlasmidP060227-22
    Expression System Vector TypePLASMID
    FragmentFILAMIN DOMAIN
    GeneTRIM45
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymRING FINGER PROTEIN 99

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2DS4)

(-) Sites  (0, 0)

(no "Site" information available for 2DS4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DS4)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser A:103 -Pro A:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

NMR Structure (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_019932R413QTRI45_HUMANPolymorphism3738413AR25Q
2UniProtVAR_019933M496TTRI45_HUMANPolymorphism1289658AT108T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.TRI45_HUMAN394-497  1A:8-109

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2cENST000002566492cENSE00001860154chr1:117664350-1176633361015TRI45_HUMAN1-1631630--
1.3bENST000002566493bENSE00000800602chr1:117661389-117660656734TRI45_HUMAN163-4082461A:1-20 (gaps)82
1.4ENST000002566494ENSE00000800601chr1:117659367-117659238130TRI45_HUMAN408-451441A:20-6344
1.5aENST000002566495aENSE00000800600chr1:117658311-117658197115TRI45_HUMAN451-489391A:63-10139
1.6ENST000002566496ENSE00000800599chr1:117656107-117655981127TRI45_HUMAN490-532431A:102-11312
1.7cENST000002566497cENSE00001656696chr1:117655075-1176536821394TRI45_HUMAN532-580490--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with TRI45_HUMAN | Q9H8W5 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:175
                                   336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496     
          TRI45_HUMAN   327 GVEFTEHLLTSGSDLEILITKRVVVERLRKLNKVQYSTRPGVNDKIRFCPQEKAGQCRGYEIYGTINTKEVDPAKCVLQGEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVMVRRKH 501
               SCOP domains d        2ds4                                                      a_ A: automated matches                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .--------....------------------------------------------------------.........eee.....eee....eeeeee...............eeeeeee........eeeee.....eeeeeee....eeeeeeeee.........eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------T----- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------FILAMIN_REPEAT  PDB: A:8-109 UniProt: 394-497                                                           ---- PROSITE
           Transcript 1 (1) Exon 1.3b  PDB: A:1-20 (gaps) UniProt: 163-408 [INCOMPLETE]                       ------------------------------------------Exon 1.5a  PDB: A:63-101               Exon 1.6     Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------Exon 1.4  PDB: A:20-63 UniProt: 408-451     -------------------------------------------------- Transcript 1 (2)
                 2ds4 A   1 G--------SSGS------------------------------------------------------SGEVDPAKCVLQGEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVTVRRKH 113
                            |        2  |      -         -         -         -         -       | 8        18        28        38        48        58        68        78        88        98       108     
                            |        2  5                                                      6                                                                                                           
                            1                                                                                                                                                                              

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DS4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DS4)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (TRI45_HUMAN | Q9H8W5)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0060348    bone development    The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0045171    intercellular bridge    A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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    Ser A:103 - Pro A:104   [ RasMol ]  
 

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