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(-) Description

Title :  SOLUTION STRUCTURE OF THE PH DOMAIN OF OXYSTEROL BINDING PROTEIN-RELATED PROTEIN 11 FROM HUMAN
 
Authors :  H. Li, M. Sato, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  13 Dec 05  (Deposition) - 13 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ph Domain, Osbp-Related Protein 11, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Li, M. Sato, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Ph Domain Of Oxysterol Binding Protein-Related Protein 11 From Human
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OXYSTEROL BINDING PROTEIN-RELATED PROTEIN 11
    ChainsA
    EngineeredYES
    Expression System PlasmidP050404-14
    Expression System Vector TypePLASMID
    FragmentPH DOMAIN
    GeneOSBPL11
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymOSBP-RELATED PROTEIN 11, ORP-11

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2D9X)

(-) Sites  (0, 0)

(no "Site" information available for 2D9X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D9X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D9X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D9X)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PH_DOMAINPS50003 PH domain profile.OSB11_HUMAN58-155  1A:8-104

(-) Exons   (6, 6)

NMR Structure (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002962201ENSE00001154393chr3:125313934-125313481454OSB11_HUMAN1-55551A:1-77
1.2ENST000002962202ENSE00001079273chr3:125301822-12530175469OSB11_HUMAN55-78241A:8-2720
1.3ENST000002962203ENSE00000967853chr3:125298884-125298709176OSB11_HUMAN78-137601A:27-8660
1.4ENST000002962204ENSE00000967854chr3:125297883-12529780480OSB11_HUMAN137-163271A:86-11227
1.5ENST000002962205ENSE00000967855chr3:125295209-125295033177OSB11_HUMAN164-222591A:113-1153
1.6ENST000002962206ENSE00000967856chr3:125286439-125286238202OSB11_HUMAN223-290681A:116-120 (gaps)17
1.7ENST000002962207ENSE00001079287chr3:125282687-125282542146OSB11_HUMAN290-338490--
1.8ENST000002962208ENSE00001079275chr3:125279363-125279223141OSB11_HUMAN339-385470--
1.10ENST0000029622010ENSE00001079276chr3:125271523-125271025499OSB11_HUMAN386-5521670--
1.11ENST0000029622011ENSE00001079279chr3:125266436-125266250187OSB11_HUMAN552-614630--
1.12ENST0000029622012ENSE00001079281chr3:125257477-125257295183OSB11_HUMAN614-675620--
1.13ENST0000029622013ENSE00001079283chr3:125250858-125250705154OSB11_HUMAN675-726520--
1.14bENST0000029622014bENSE00001942711chr3:125249424-1252477021723OSB11_HUMAN727-747210--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with OSB11_HUMAN | Q9BXB4 from UniProtKB/Swiss-Prot  Length:747

    Alignment length:206
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239      
          OSB11_HUMAN    40 SSSSSRGGSAKGWQYSDHMENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNPPLKSRSFSLASSSNSPISQRRPSQNAISFFNVGHSKLQSLSKRTNLPPDHLVEVREMMSHAEGQQRDLIRRIECLPTSG 245
               SCOP domains d2d9xa_             A: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......------------..eeeeeee........eeeeeee.....eeeee...........eeee.....ee........eee.......eeee...hhhhhhhhhhhhhhhhhhhhh......--------------------------------------------------------------.------------.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------PH_DOMAIN  PDB: A:8-104 UniProt: 58-155                                                           ------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1        ----------------------Exon 1.3  PDB: A:27-86 UniProt: 78-137                      --------------------------Exon 1.5  PDB: A:113-115 UniProt: 164-222 [INCOMPLETE]     Exon 1.6 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2  PDB: A:8-27   ----------------------------------------------------------Exon 1.4  PDB: A:86-112    ---------------------------------------------------------------------------------- Transcript 1 (2)
                 2d9x A   1 GSSGSSG------------ENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNS--------------------------------------------------------------G------------PSSG 120
                                  |  -         8        18        28        38        48        58        68        78        88        98       108      |  -         -         -         -         -         -       116         -  |   
                                  7            8                                                                                                        115                                                            116          117   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D9X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D9X)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (OSB11_HUMAN | Q9BXB4)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0045444    fat cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat.
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0010890    positive regulation of sequestering of triglyceride    Any process that increases the rate, frequency or extent of sequestering of triglyceride. Triglyceride sequestration is the process of binding or confining any triester of glycerol such that it is separated from other components of a biological system.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0031902    late endosome membrane    The lipid bilayer surrounding a late endosome.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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