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(-) Description

Title :  STRUCTURAL AND KINETIC BASIS FOR HEIGHTENED IMMUNOGENICITY OF T CELL VACCINES
 
Authors :  J. -L. Chen, G. Stewart-Jones, G. Bossi, N. M. Lissin, L. Wooldridge, E. M. L. Choi, G. Held, P. R. Dunbar, R. M. Esnouf, M. Sami, J. M. Boultier, P. J. Rizkallah, C. Renner, A. Sewell, P. A. Van Der Merwe, B. K. Jackobsen, G. Griffiths, E. Y. Jones, V. Cerundolo
Date :  31 Mar 05  (Deposition) - 23 May 05  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Immune System/Receptor, Immune System/Receptor/Complex, Tcr, Mhc, Immunodominance, Flu, Complex, Peptide, Transmembrane, Glycoprotein, Signal, Polymorphism, T-Cell, Receptor, Superagonist Peptide T-Cell Vaccines (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. -L. Chen, G. Stewart-Jones, G. Bossi, N. M. Lissin, L. Wooldridge, E. M. L. Choi, G. Held, P. R. Dunbar, R. M. Esnouf, M. Sami, J. M. Boultier, P. Rizkallah, C. Renner, A. Sewell, P. A. Van Der Merwe, B. K. Jackobsen, G. Griffiths, E. Y. Jones, V. Cerundolo
Structural And Kinetic Basis For Heightened Immunogenicity Of T Cell Vaccines
J. Exp. Med. V. 201 1243 2005
PubMed-ID: 15837811  |  Reference-DOI: 10.1084/JEM.20042323
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HLA CLASS I HISTOCOMPATIBILITY ANTIGEN
    CellANTIGEN PRESENTING CELL
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBLR
    Expression System Taxid562
    Expression System VectorPETT22B+
    FragmentEXTRACELLULAR ALPHA-1, -2, -3, RESIDUES 25-300
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsREFOLDED FROM INCLUSION BODIES
    SynonymMHC, A-2 ALPHA CHAIN PRECURSOR
 
Molecule 2 - BETA-2-MICROGLOBULIN
    CellANTIGEN PRESENTING CELL
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBLR
    Expression System Taxid562
    Expression System VectorPETT22B+
    FragmentBETA-2-MICROGLOBULIN, RESIDUES 21-119
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsREFOLDED FROM INCLUSION BODIES FROM INCLUSION BODIES
    SynonymHDCMA22P, B2M
 
Molecule 3 - SYNTHETIC PEPTIDE
    CellANTIGEN PRESENTING CELL
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBLR
    Expression System Taxid562
    Expression System VectorPETT22B+
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsREFOLDED FROM INCLUSION BODIES. PEPTIDE CHAIN C.
    SyntheticYES
 
Molecule 4 - T-CELL RECEPTOR ALPHA CHAIN V REGION
    CellT-LYMPHOCYTE
    ChainsD
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBLR
    Expression System Taxid562
    Expression System VectorPETT22B+
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCONTAINS ALSO C (CONSTANT) REGION
    Other Details - SourceREFOLDED FROM INCLUSION BODIES
    TissueIMMUNE SYTEM
 
Molecule 5 - T-CELL RECEPTOR BETA CHAIN C REGION
    CellT-LYMPHOCYTE
    ChainsE
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBLR
    Expression System Taxid562
    Expression System VectorPETT22B+
    FragmentEXTRACELLULAR, RESIDUES 1-130
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsREFOLDED FROM INCLUSION BODIES.
    SynonymTRBC1
    TissueIMMUNE SYTEM

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BNR)

(-) Sites  (0, 0)

(no "Site" information available for 2BNR)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:101 -A:164
2A:203 -A:259
3B:25 -B:80
4D:23 -D:90
5D:137 -D:187
6D:162 -E:169
7E:22 -E:90
8E:143 -E:208

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Tyr A:209 -Pro A:210
2His B:31 -Pro B:32
3Ile D:7 -Pro D:8
4Thr E:6 -Pro E:7
5Tyr E:149 -Pro E:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (24, 24)

Asymmetric/Biological Unit (24, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_004334F33Y1A02_HUMANPolymorphism2075684AF9Y
02UniProtVAR_004335D54N1A02_HUMANPolymorphism41549215AD30N
03UniProtVAR_016726A65G1A02_HUMANPolymorphism41557613AA41G
04UniProtVAR_004336Q67R1A02_HUMANPolymorphism41559117AQ43R
05UniProtVAR_076446R89G1A02_HUMANPolymorphism199474430AR65G
06UniProtVAR_004337K90N1A02_HUMANPolymorphism199474436AK66N
07UniProtVAR_016727H94Q1A02_HUMANPolymorphism78306866AH70Q
08UniProtVAR_004338T97I1A02_HUMANPolymorphism199474457AT73I
09UniProtVAR_016728H98D1A02_HUMANPolymorphism1136683AH74D
10UniProtVAR_076691D96NB2MG_HUMANDisease (AMYL8)398122820BD76N
11UniProtVAR_004339V119L1A02_HUMANPolymorphism1071743AV95L
12UniProtVAR_004340R121M1A02_HUMANPolymorphism199474485AR97M
13UniProtVAR_004341Y123C1A02_HUMANPolymorphism1136697AY99C
14UniProtVAR_004342Y123F1A02_HUMANPolymorphism1136697AY99F
15UniProtVAR_004343W131G1A02_HUMANPolymorphism1136702AW107G
16UniProtVAR_004344M162K1A02_HUMANPolymorphism41549316AM138K
17UniProtVAR_004345A173T1A02_HUMANPolymorphism1059526AA149T
18UniProtVAR_004346V176E1A02_HUMANPolymorphism9256983AV152E
19UniProtVAR_004348L180Q1A02_HUMANPolymorphism  ---AL156Q
20UniProtVAR_004347L180W1A02_HUMANPolymorphism9260156AL156W
21UniProtVAR_004349T187E1A02_HUMANPolymorphism  ---AT163E
22UniProtVAR_016729E190D1A02_HUMANPolymorphism879577815AE166D
23UniProtVAR_016730W191G1A02_HUMANPolymorphism3098019AW167G
24UniProtVAR_004350A260E1A02_HUMANPolymorphism41540417AA236E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.B2MG_HUMAN98-104  1B:78-84
1A02_HUMAN281-287  1A:257-263

(-) Exons   (1, 1)

Asymmetric/Biological Unit (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003284351bENSE00001657401X:153847522-153847201322CTG1B_HUMAN1-90900--
1.2aENST000003284352aENSE00001758669X:153846529-153846395135CTG1B_HUMAN90-135460--
1.2cENST000003284352cENSE00001800972X:153846155-153845865291CTG1B_HUMAN135-180461C:1-99

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:276
 aligned with 1A02_HUMAN | P01892 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:276
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      
           1A02_HUMAN    25 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 300
               SCOP domains d2bnra2 A:1-181 Class I MHC, alpha-1 and alpha-2 domains                                                                                                                             d2bnra1 A:182-276 Class I MHC, alpha-3 domain                                                   SCOP domains
               CATH domains 2bnrA01 A:1-181 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                          2bnrA02 A:182-270 Immunoglobulins                                                        ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeee........eeeeeeee..eeeeeee........ee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee....eeeeeeeeeee.....eeeeee..ee.....ee...ee.....eeeeeeeeee..hhh.eeeeee.......eeee... Sec.struct. author
             SAPs(SNPs) (1) --------Y--------------------N----------G-R---------------------GN---Q--ID--------------------L-M-C-------G------------------------------K----------T--E---Q------E--DG--------------------------------------------------------------------E---------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------F--------------------------------------------------------W------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bnr A   1 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      

Chain B from PDB  Type:PROTEIN  Length:100
 aligned with B2MG_HUMAN | P61769 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:100
                                    29        39        49        59        69        79        89        99       109       119
           B2MG_HUMAN    20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
               SCOP domains d2bnrb_ B: beta2-microglobulin                                                                       SCOP domains
               CATH domains 2bnrB00 B:0-99 Immunoglobulins                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.........eeeeeeeeee.....eeeeee..ee....ee...ee.....eeeeeeeee.......eeeeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------N----------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 2bnr B   0 MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM  99
                                     9        19        29        39        49        59        69        79        89        99

Chain C from PDB  Type:PROTEIN  Length:9
 aligned with CTG1B_HUMAN | P78358 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:9
          CTG1B_HUMAN   157 SLLMWITQC 165
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
               Transcript 1 Exon 1.2c Transcript 1
                 2bnr C   1 SLLMWITQC   9

Chain D from PDB  Type:PROTEIN  Length:203
 aligned with A0A0B4J279_H | A0A0B4J279 from UniProtKB/TrEMBL  Length:112

    Alignment length:203
                                                                                                                     112                                                                                                               
                                    30        40        50        60        70        80        90       100       110 |       -         -         -         -         -         -         -         -         -         -         -   
         A0A0B4J279_H    21 QEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVR---------------------------------------------------------------------------------------------------------------   -
               SCOP domains d2bnrd1 D:2-114 T-cell antigen receptor                                                                          d2bnrd2 D:115-204 T-cell antigen receptor                                                  SCOP domains
               CATH domains 2bnrD01 D:2-114 Immunoglobulins                                                                                  2bnrD02 D:115-204 Immunoglobulins                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeeee....eeeeeee....eeeeeeeee.....eeeeeeee....eeee..eeeeee....eeeeee...hhhhheeeeeeeee........ee...eeeeee........eeeeee.......eeeeee...............eee...eeeeehhhheeeeeeeeee.....hhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnr D   2 QEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   

Chain D from PDB  Type:PROTEIN  Length:203
 aligned with TCA_HUMAN | P01848 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:203
                                                                                                                                            1                                                                                          
                                     -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88   
            TCA_HUMAN     - ----------------------------------------------------------------------------------------------------------------PNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS  91
               SCOP domains d2bnrd1 D:2-114 T-cell antigen receptor                                                                          d2bnrd2 D:115-204 T-cell antigen receptor                                                  SCOP domains
               CATH domains 2bnrD01 D:2-114 Immunoglobulins                                                                                  2bnrD02 D:115-204 Immunoglobulins                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeeee....eeeeeee....eeeeeeeee.....eeeeeeee....eeee..eeeeee....eeeeee...hhhhheeeeeeeee........ee...eeeeee........eeeeee.......eeeeee...............eee...eeeeehhhheeeeeeeeee.....hhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnr D   2 QEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   

Chain E from PDB  Type:PROTEIN  Length:241
 aligned with A0A0K0K1A5_H | A0A0K0K1A5 from UniProtKB/TrEMBL  Length:114

    Alignment length:241
                                                                                                                      114                                                                                                                                                    
                                    31        41        51        61        71        81        91       101       111  |      -         -         -         -         -         -         -         -         -         -         -         -         -         -         - 
         A0A0K0K1A5_H    22 GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSY----------------------------------------------------------------------------------------------------------------------------------------------------   -
               SCOP domains d2bnre1 E:2-113 T-cell antigen receptor                                                                         d2bnre2 E:114-242 T-cell antigen receptor                                                                                         SCOP domains
               CATH domains 2bnrE01 E:2-113 Immunoglobulins                                                                                 2bnrE02 E:114-239 Immunoglobulins                                                                                             --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeee....eeeeeee.....eeeeeeee...eeeeeeeeee..eeee.......ee.........eee...hhhhheeeeeeee........ee...eeeeee.hhhhh...eeeee..hhhhhhhhheeeeeeeeeee....eeeeeee..eee...eee....ee.........eeeeeeeeeehhhhh....eeeeeeee..................eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnr E   2 GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYVGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD 242
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 

Chain E from PDB  Type:PROTEIN  Length:241
 aligned with TRBC1_HUMAN | P01850 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:241
                                                                                                                                           1                                                                                                                                 
                                     -         -         -         -         -         -         -         -         -         -         - |       9        19        29        39        49        59        69        79        89        99       109       119       129 
          TRBC1_HUMAN     - ---------------------------------------------------------------------------------------------------------------EDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD 130
               SCOP domains d2bnre1 E:2-113 T-cell antigen receptor                                                                         d2bnre2 E:114-242 T-cell antigen receptor                                                                                         SCOP domains
               CATH domains 2bnrE01 E:2-113 Immunoglobulins                                                                                 2bnrE02 E:114-239 Immunoglobulins                                                                                             --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeee....eeeeeee.....eeeeeeee...eeeeeeeeee..eeee.......ee.........eee...hhhhheeeeeeee........ee...eeeeee.hhhhh...eeeee..hhhhhhhhheeeeeeeeeee....eeeeeee..eee...eee....ee.........eeeeeeeeeehhhhh....eeeeeeee..................eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnr E   2 GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYVGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD 242
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (7, 7)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
2a2bnrB00B:0-99
2b2bnrA02A:182-270
2c2bnrD01D:2-114
2d2bnrE01E:2-113
2e2bnrD02D:115-204
2f2bnrE02E:114-239

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BNR)

(-) Gene Ontology  (74, 109)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (1A02_HUMAN | P01892)
molecular function
    GO:0042608    T cell receptor binding    Interacting selectively and non-covalently with a T cell receptor, the antigen-recognizing receptor on the surface of T cells.
    GO:0046977    TAP binding    Interacting selectively and non-covalently with TAP protein, transporter associated with antigen processing protein. TAP protein is a heterodimeric peptide transporter consisting of the subunits TAP1 and TAP2.
    GO:0030881    beta-2-microglobulin binding    Interacting selectively and non-covalently with beta-2-microglobulin.
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0019731    antibacterial humoral response    An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0019885    antigen processing and presentation of endogenous peptide antigen via MHC class I    The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules.
    GO:0002486    antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent    The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP-independent ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in the ER following transport from the cytosol via a TAP-independent pathway. Class I here refers to classical class I molecules.
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0002480    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules.
    GO:0002474    antigen processing and presentation of peptide antigen via MHC class I    The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules.
    GO:0050830    defense response to Gram-positive bacterium    Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0060333    interferon-gamma-mediated signaling pathway    A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
    GO:2001187    positive regulation of CD8-positive, alpha-beta T cell activation    Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell activation.
    GO:2000566    positive regulation of CD8-positive, alpha-beta T cell proliferation    Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation.
    GO:0002726    positive regulation of T cell cytokine production    Any process that activates or increases the frequency, rate, or extent of T cell cytokine production.
    GO:0001916    positive regulation of T cell mediated cytotoxicity    Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity.
    GO:0032729    positive regulation of interferon-gamma production    Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon.
    GO:2000568    positive regulation of memory T cell activation    Any process that activates or increases the frequency, rate or extent of memory T cell activation.
    GO:0050690    regulation of defense response to virus by virus    Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0060337    type I interferon signaling pathway    A series of molecular signals initiated by the binding of a type I interferon to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0012507    ER to Golgi transport vesicle membrane    The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005797    Golgi medial cisterna    The middle Golgi cisterna (or cisternae).
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0042612    MHC class I protein complex    A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0070971    endoplasmic reticulum exit site    An endoplasmic reticulum part at which COPII-coated vesicles are produced.
    GO:0071556    integral component of lumenal side of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030670    phagocytic vesicle membrane    The lipid bilayer surrounding a phagocytic vesicle.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B   (B2MG_HUMAN | P61769)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0033077    T cell differentiation in thymus    The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus.
    GO:0019731    antibacterial humoral response    An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
    GO:0019885    antigen processing and presentation of endogenous peptide antigen via MHC class I    The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules.
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0002480    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules.
    GO:0002481    antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.
    GO:0002474    antigen processing and presentation of peptide antigen via MHC class I    The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules.
    GO:0044267    cellular protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
    GO:0071281    cellular response to iron ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
    GO:0071222    cellular response to lipopolysaccharide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0050829    defense response to Gram-negative bacterium    Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
    GO:0050830    defense response to Gram-positive bacterium    Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0060333    interferon-gamma-mediated signaling pathway    A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
    GO:0055072    iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
    GO:0010977    negative regulation of neuron projection development    Any process that decreases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:1900121    negative regulation of receptor binding    Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.
    GO:0002726    positive regulation of T cell cytokine production    Any process that activates or increases the frequency, rate, or extent of T cell cytokine production.
    GO:0001916    positive regulation of T cell mediated cytotoxicity    Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity.
    GO:1904434    positive regulation of ferrous iron binding    Any process that activates or increases the frequency, rate or extent of ferrous iron binding.
    GO:0032092    positive regulation of protein binding    Any process that activates or increases the frequency, rate or extent of protein binding.
    GO:1900122    positive regulation of receptor binding    Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.
    GO:0048260    positive regulation of receptor-mediated endocytosis    Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport.
    GO:1904437    positive regulation of transferrin receptor binding    Any process that activates or increases the frequency, rate or extent of transferrin receptor binding.
    GO:0042026    protein refolding    The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
    GO:0050690    regulation of defense response to virus by virus    Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0003254    regulation of membrane depolarization    Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive.
    GO:0046686    response to cadmium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0002237    response to molecule of bacterial origin    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
    GO:0001895    retina homeostasis    A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
cellular component
    GO:0012507    ER to Golgi transport vesicle membrane    The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:1990712    HFE-transferrin receptor complex    A protein complex containing at least HFE and a transferrin receptor (either TFR1/TFRC or TFR2), proposed to play a role in the sensing of transferrin-bound Fe (Fe2-Tf) on the plasma membrane to regulate hepcidin transcription.
    GO:0042612    MHC class I protein complex    A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031905    early endosome lumen    The volume enclosed by the membrane of an early endosome.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030670    phagocytic vesicle membrane    The lipid bilayer surrounding a phagocytic vesicle.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C   (CTG1B_HUMAN | P78358)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain D   (A0A0B4J279_H | A0A0B4J279)

Chain D   (TCA_HUMAN | P01848)
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain E   (TRBC1_HUMAN | P01850)
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain E   (A0A0K0K1A5_H | A0A0K0K1A5)

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(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1A02_HUMAN | P018921akj 1ao7 1aqd 1b0g 1b0r 1bd2 1duy 1duz 1eey 1eez 1hhg 1hhh 1hhi 1hhj 1hhk 1hla 1i1f 1i1y 1i4f 1i7r 1i7t 1i7u 1im3 1jf1 1jht 1lp9 1oga 1p7q 1qew 1qr1 1qrn 1qse 1qsf 1s8d 1s9w 1s9x 1s9y 1t1w 1t1x 1t1y 1t1z 1t20 1t21 1t22 1tvb 1tvh 1ur7 2av1 2av7 2bnq 2c7u 2clr 2f53 2f54 2git 2gj6 2gt9 2gtw 2gtz 2guo 2j8u 2jcc 2p5e 2p5w 2pye 2uwe 2v2w 2v2x 2vlj 2vlk 2vll 2vlr 2x4n 2x4o 2x4p 2x4q 2x4r 2x4s 2x4t 2x4u 2x70 3bgm 3bh8 3bh9 3bhb 3d25 3d39 3d3v 3fqn 3fqr 3fqt 3fqu 3fqw 3fqx 3ft2 3ft3 3ft4 3giv 3gjf 3gsn 3gso 3gsq 3gsr 3gsu 3gsv 3gsw 3gsx 3h7b 3h9h 3h9s 3hae 3hla 3hpj 3i6g 3i6k 3ixa 3kla 3mgo 3mgt 3mr9 3mrb 3mrc 3mrd 3mre 3mrf 3mrg 3mrh 3mri 3mrj 3mrk 3mrl 3mrm 3mrn 3mro 3mrp 3mrq 3mrr 3myj 3o3a 3o3b 3o3d 3o3e 3o4l 3pwj 3pwl 3pwn 3pwp 3qdg 3qdj 3qdm 3qeq 3qfd 3qfj 3rew 3to2 3utq 3uts 3utt 3v5d 3v5h 3v5k 4e5x 4emz 4en2 4eup 4ftv 4gkn 4gks 4i4w 4jfd 4jfe 4jff 4jfo 4jfp 4jfq 4k7f 4l29 4l3c 4l3e 4mnq 4nnx 4nny 4no0 4no2 4no3 4no5 4ov5 4qok 4u6x 4u6y 4uq3 4wj5 4wuu 4zez 5c07 5c08 5c09 5c0a 5c0b 5c0c 5c0d 5c0e 5c0f 5c0g 5c0i 5c0j 5d2l 5d2n 5d9s 5ddh 5e00 5e6i 5e9d 5enw 5eot 5eu3 5eu4 5eu5 5eu6 5euo 5f7d 5f9j 5fa3 5fa4 5fdw 5hhm 5hhn 5hho 5hhp 5hhq 5hyj 5iro 5isz 5jhd 5jzi 5men 5meo 5mep 5meq 5mer 5n1y 5swq
        B2MG_HUMAN | P617691a1m 1a1n 1a1o 1a6z 1a9b 1a9e 1agb 1agc 1agd 1age 1agf 1akj 1ao7 1b0g 1b0r 1bd2 1c16 1ce6 1cg9 1de4 1duy 1duz 1e27 1e28 1eey 1eez 1efx 1exu 1gzp 1gzq 1hhg 1hhh 1hhi 1hhj 1hhk 1hla 1hsa 1hsb 1i1f 1i1y 1i4f 1i7r 1i7t 1i7u 1im3 1im9 1jf1 1jgd 1jge 1jht 1jnj 1k5n 1kpr 1ktl 1lds 1lp9 1m05 1m6o 1mhe 1mi5 1n2r 1of2 1oga 1ogt 1onq 1p7q 1py4 1q94 1qew 1qlf 1qqd 1qr1 1qrn 1qse 1qsf 1qvo 1r3h 1s8d 1s9w 1s9x 1s9y 1sys 1syv 1t1w 1t1x 1t1y 1t1z 1t20 1t21 1t22 1tmc 1tvb 1tvh 1uqs 1ur7 1uxs 1uxw 1vgk 1w0v 1w0w 1w72 1x7q 1xh3 1xr8 1xr9 1xz0 1ydp 1ypz 1zhk 1zhl 1zs8 1zsd 1zt4 1zvs 2a83 2ak4 2av1 2av7 2axf 2axg 2bck 2bnq 2bsr 2bss 2bst 2bvo 2bvp 2bvq 2c7u 2cii 2cik 2clr 2d31 2d4d 2d4f 2dyp 2e8d 2esv 2f53 2f54 2f74 2f8o 2fyy 2fz3 2git 2gj6 2gt9 2gtw 2gtz 2guo 2h26 2h6p 2hjk 2hjl 2hla 2hn7 2j8u 2jcc 2nw3 2nx5 2p5e 2p5w 2po6 2pye 2rfx 2uwe 2v2w 2v2x 2vb5 2vlj 2vlk 2vll 2vlr 2x4n 2x4o 2x4p 2x4q 2x4r 2x4s 2x4t 2x4u 2x70 2x89 2xks 2xku 2xpg 2ypk 2ypl 2yxf 2z9t 3am8 3b3i 3b6s 3bgm 3bh8 3bh9 3bhb 3bo8 3bp4 3bp7 3bvn 3bw9 3bwa 3bxn 3bze 3bzf 3c9n 3cdg 3cii 3ciq 3czf 3d18 3d25 3d2u 3d39 3d3v 3dbx 3dhj 3dhm 3dtx 3dx6 3dx7 3dx8 3dxa 3ekc 3ffc 3fqn 3fqr 3fqt 3fqu 3fqw 3fqx 3ft2 3ft3 3ft4 3giv 3gjf 3gsn 3gso 3gsq 3gsr 3gsu 3gsv 3gsw 3gsx 3h7b 3h9h 3h9s 3hae 3hcv 3hg1 3hla 3hpj 3huj 3i6g 3i6k 3i6l 3ib4 3ixa 3jts 3kla 3kpl 3kpm 3kpn 3kpo 3kpp 3kpq 3kpr 3kps 3kww 3kxf 3kyn 3kyo 3l3d 3l3g 3l3i 3l3j 3l3k 3lkn 3lko 3lkp 3lkq 3lkr 3lks 3ln4 3ln5 3low 3loz 3lv3 3m17 3m1b 3mgo 3mgt 3mr9 3mrb 3mrc 3mrd 3mre 3mrf 3mrg 3mrh 3mri 3mrj 3mrk 3mrl 3mrm 3mrn 3mro 3mrp 3mrq 3mrr 3mv7 3mv8 3mv9 3myj 3myz 3mzt 3na4 3nfn 3o3a 3o3b 3o3d 3o3e 3o4l 3ov6 3ox8 3oxr 3oxs 3pwj 3pwl 3pwn 3pwp 3qda 3qdg 3qdj 3qdm 3qeq 3qfd 3qfj 3qzw 3rew 3rl1 3rl2 3rwj 3s6c 3sdx 3sjv 3skm 3sko 3spv 3t8x 3tid 3tie 3tlr 3tm6 3to2 3tzv 3u0p 3upr 3utq 3uts 3utt 3v5d 3v5h 3v5k 3vcl 3vfm 3vfn 3vfo 3vfp 3vfr 3vfs 3vft 3vfu 3vfv 3vfw 3vh8 3vri 3vrj 3vwj 3vwk 3vxm 3vxn 3vxo 3vxp 3vxr 3vxs 3vxu 3w0w 3w39 3wl9 3wlb 3wuw 3x11 3x12 3x13 3x14 4e0k 4e0l 4e5x 4en3 4eup 4f7m 4f7p 4f7t 4ftv 4fxl 4g8g 4g8i 4g9d 4g9f 4gkn 4gks 4gup 4hkj 4hwz 4hx1 4i48 4i4w 4jfd 4jfe 4jff 4jfo 4jfp 4jfq 4jqv 4jqx 4jrx 4jry 4k71 4k7f 4kdt 4l29 4l3c 4l3e 4l4t 4l4v 4lcw 4lcy 4lhu 4lnr 4m8v 4mj5 4mj6 4mji 4mnq 4n0f 4n0u 4n8v 4nnx 4nny 4no0 4no2 4no3 4no5 4nqc 4nqd 4nqe 4nqv 4nqx 4nt6 4o2c 4o2e 4o2f 4ono 4pj5 4pj7 4pj8 4pj9 4pja 4pjb 4pjc 4pjd 4pje 4pjf 4pjg 4pjh 4pji 4pjx 4pr5 4pra 4prb 4prd 4pre 4prh 4pri 4prn 4prp 4qok 4qrp 4qrq 4qrr 4qrs 4qrt 4qru 4r9h 4ra3 4rah 4rmq 4rmr 4rms 4rmt 4rmu 4rmv 4rmw 4u1h 4u1i 4u1j 4u1k 4u1l 4u1m 4u1n 4u1s 4u6x 4u6y 4uq2 4uq3 4wc8 4wdi 4wj5 4wo4 4wu5 4wu7 4wuu 4ww2 4wwk 4x0s 4x6c 4x6d 4x6e 4x6f 4xxc 4z76 4z77 4z78 4zez 5b38 5b39 5bjt 5brz 5bs0 5bxf 5c07 5c08 5c09 5c0a 5c0b 5c0c 5c0d 5c0e 5c0f 5c0g 5c0i 5c0j 5c9j 5cfh 5cka 5ckg 5cs7 5csb 5csg 5d2l 5d2n 5d5m 5d7i 5d7j 5d7l 5d9s 5ddh 5def 5deg 5e00 5e6i 5e9d 5enw 5eo0 5eo1 5eot 5eu3 5eu4 5eu5 5eu6 5euo 5f7d 5f9j 5fa3 5fa4 5fdw 5gr7 5gsb 5gsr 5gsv 5gsx 5hga 5hgb 5hgd 5hgh 5hhm 5hhn 5hho 5hhp 5hhq 5hyj 5ib1 5ib2 5ib3 5ib4 5ib5 5ieh 5iek 5im7 5inc 5ind 5iro 5isz 5iue 5j1a 5jhd 5jzi 5knm 5l2j 5l2k 5men 5meo 5mep 5meq 5mer 5n1y 5swq 5t6w 5t6x 5t6y 5t6z 5t70 5u16 5u17 5u1r 5u2v 5u6q 5u72 5v5l 5v5m 5vgd 5vge 5xos 5xot 5xov
        CTG1B_HUMAN | P783581s9w 2bnq 2f53 2f54 2p5e 2p5w 2pye 3gjf 3hae 3kla
        TCA_HUMAN | P018481ao7 1bd2 1fyt 1j8h 1kgc 1mi5 1oga 1qrn 1qsf 1ymm 1zgl 2ak4 2bnq 2bnu 2cdf 2cdg 2esv 2eyr 2eys 2eyt 2f53 2f54 2gj6 2ial 2iam 2ian 2nx5 2p5e 2p5w 2po6 2pye 2pyf 2vlj 2vlk 2vlm 2vlr 2xn9 2xna 3arb 3ard 3are 3arf 3arg 3d39 3dx9 3dxa 3ffc 3gsn 3he7 3hg1 3kpr 3kps 3kxf 3o4l 3o6f 3o8x 3o9w 3pwp 3qdg 3qdj 3qdm 3qeq 3qeu 3qib 3qjf 3qux 3scm 3sda 3sdc 3sdd 3sdx 3sjv 3skn 3t0e 3tn0 3tvm 4apq 4c56 4g8e 4g8f 4irs 4jfd 4jfe 4jff 4jfh 4jrx 4jry 4mvb 4mxq 4n0c 4n5e 4nhu 4onh 4p4k 4prh 4pri 4prp 4udt 4udu 4ww1 4ww2 4wwk 4x6b 4x6c 4x6d 4y16 4y2d 4y4f 4y4h 4y4k 4zdh 4zez 5brz 5bs0 5c07 5c08 5c09 5c0a 5c0b 5c0c 5eu6 5fk9 5fka 5hhm 5hho 5hyj 5ks9 5ksa 5ksb
        TRBC1_HUMAN | P018501ao7 1fyt 1j8h 1kgc 1ktk 1mi5 1oga 1ymm 1zgl 2ak4 2axh 2bnq 2bnu 2cde 2cdf 2cdg 2esv 2f53 2f54 2gj6 2ial 2iam 2ian 2nts 2nw2 2nx5 2p5e 2p5w 2po6 2pye 2pyf 2vlj 2vlk 2vlm 2vlr 2xn9 2xna 3arb 3ard 3are 3arf 3arg 3d39 3d3v 3dx9 3dxa 3ffc 3he6 3hg1 3kpr 3kps 3o4l 3tn0 4g8e 4g8f 4gg6 4gg8 4iiq 4jfd 4jfe 4jff 4jfh 4jrx 4jry 4l4t 4l4v 4l9l 4lcc 4lcw 4mji 4mnq 4nqc 4nqd 4nqe 4ozf 4ozg 4ozh 4ozi 4p46 4prh 4pri 4prp 4x6b 4x6c 4x6d 4zdh
UniProtKB/TrEMBL
        A0A0B4J279_H | A0A0B4J2792bnq 2bnu 4ww1 4ww2 5brz 5bs0 5eu6
        A0A0K0K1A5_H | A0A0K0K1A51ao7 1bd2 2bnq 2bnu 4mnq 4wwk

(-) Related Entries Specified in the PDB File

1a1m MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDETYPDINQML FROM GAG PROTEIN OF HIV2
1a1n MHC CLASS I MOLECULE B*3501 COMPLEXED WITH PEPTIDE VPLRPMTYFROM THE NEF PROTEIN (75- 82) OF HIV1
1a1o MHC CLASS I MOLECULE B5301 COMPLEXED WITH PEPTIDE LS6 (KPIVQYDNF) FROM THE MALARIA PARASITE P. FALCIPARUM
1a6z HFE (HUMAN) HEMOCHROMATOSIS PROTEIN
1a9b DECAMER-LIKE CONFORMATION OF A NANO-PEPTIDE BOUND TO HLA-B 3501 DUE TO NONSTANDARD POSITIONING OF THE C-TERMINUS
1a9e DECAMER-LIKE CONFORMATION OF A NANO-PEPTIDE BOUND TO HLA-B 3501 DUE TO NONSTANDARD POSITIONING OF THE C-TERMINUS
1agb ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8 - HIV-1 GAG PEPTIDE (GGRKKYKL - 3R MUTATION)
1agc ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8 - HIV-1 GAG PEPTIDE (GGKKKYQL - 7Q MUTATION)
1agd ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8 - HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE)
1age ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8 - HIV-1 GAG PEPTIDE (GGKKKYRL - 7R MUTATION)
1agf ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8 - HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION)
1akj COMPLEX OF THE HUMAN MHC CLASS I GLYCOPROTEIN HLA-A2 ANDTHE T CELL CORECEPTOR CD8
1ao7 COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, VIRAL PEPTIDE (TAX), AND HLA-A 0201
1b0g CRYSTAL STRUCTURE OF HUMAN CLASS I MHC ( HLA-A2.1) COMPLEXED WITH BETA 2- MICROGLOBULIN AND HUMAN PEPTIDE P1049
1b0r CRYSTAL STRUCTURE OF HLA-A0201 COMPLEXED WITH A PEPTIDE WITH THE CARBOXYL-TERMINAL GROUP SUBSTITUTED BY A METHYL GROUP
1bd2 COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC CLASS I MOLECULE HLA-A 0201
1ce6 MHC CLASS I H-2DB COMPLEXED WITH A SENDAI VIRUSNUCLEOPROTEIN PEPTIDE
1de4 HEMOCHROMATOSIS PROTEIN HFE COMPLEXED WITH TRANSFERRINRECEPTOR
1duy CRYSTAL STRUCTURE OF HLA-A0201/OCTAMERIC TAX PEPTIDE COMPLEX
1duz HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA -A 0201) INCOMPLEX WITH A NONAMERIC PEPTIDE FROM HTLV-1 TAX PROTEIN
1e27 NONSTANDARD PEPTIDE BINDING OF HLA-B*5101 COMPLEXED WITH HIV IMMUNODOMINANT EPITOPE KM1 (LPPVVAKEI)
1e28 NONSTANDARD PEPTIDE BINDING OF HLA-B*5101 COMPLEXED WITH HIV IMMUNODOMINANT EPITOPE KM2 (TAFTIPSI)
1efx STRUCTURE OF A COMPLEX BETWEEN THE HUMAN NATURAL KILLER CELL RECEPTOR KIR2DL2 AND A CLASS I MHC LIGAND HLA-CW3
1exu CRYSTAL STRUCTURE OF THE HUMAN MHC-RELATED FC RECEPTOR
1fyt CRYSTAL STRUCTURE OF A COMPLEX OF A HUMAN ALPHA/BETA-T CELLRECEPTOR, INFLUENZA HA ANTIGEN PEPTIDE, AND MHC CLASS IIMOLECULE, HLA-DR1
1gzp CD1B IN COMPLEX WITH GM2 GANGLIOSIDE
1gzq CD1B IN COMPLEX WITH PHOPHATIDYLINOSITOL
1hhg
1hhh
1hhi
1hhj HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA -A 0201) COMPLEX WITH A NONAMERIC PEPTIDE FROM HIV-1 REVERSE TRANSCRIPTASE (RESIDUES 309-317)
1hhk
1hla HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN A2 ( HLA-A2, HUMAN LEUCOCYTE ANTIGEN)
1hsa HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN HLA- B(ASTERISK)2705
1hsb CLASS I HISTOCOMPATIBILITY ANTIGEN AW68.1 ( LEUCOCYTE ANTIGEN)
1i1f CRYSTAL STRUCTURE OF HUMAN CLASS I MHC ( HLA-A2.1) COMPLEXED WITH BETA 2- MICROGLOBULIN AND HIV-RT VARIANT PEPTIDE I1Y
1i1y CRYSTAL STRUCTURE OF HUMAN CLASS I MHC ( HLA-A2.1) COMPLEXED WITH BETA 2- MICROGLOBULIN AND HIV-RT VARIANT PEPTIDE I1Y
1i4f CRYSTAL STRUCTURE OF HLA-A*0201/MAGE-A4- PEPTIDE COMPLEX
1i7r CRYSTAL STRUCTURE OF CLASS I MHC A2 IN COMPLEX WITH PEPTIDEP1058
1i7t CRYSTAL STRUCTURE OF CLASS I MHC A2 IN COMPLEX WITH PEPTIDEP1049-5V
1i7u CRYSTAL STRUCTURE OF CLASS I MHC A2 IN COMPLEX WITH PEPTIDEP1049-6V
1im3 CRYSTAL STRUCTURE OF THE HUMAN CYTOMEGALOVIRUS PROTEIN US2BOUND TO THE MHC CLASS I MOLECULE HLA-A2/TAX
1im9 CRYSTAL STRUCTURE OF THE HUMAN NATURAL KILLER CELLINHIBITORY RECEPTOR KIR2DL1 BOUND TO ITS MHC LIGAND HLA-CW4
1jf1 CRYSTAL STRUCTURE OF HLA-A2*0201 IN COMPLEX WITH ADECAMERIC ALTERED PEPTIDE LIGAND FROM THE MART-1/MELAN-A
1jge HLA-B*2705 BOUND TO NONA-PEPTIDE M9
1jht CRYSTAL STRUCTURE OF HLA-A2*0201 IN COMPLEX WITH ANONAMERIC ALTERED PEPTIDE LIGAND (ALGIGILTV) FROM THE MART-1/MELAN-A.
1jnj NMR SOLUTION STRUCTURE OF THE HUMAN BETA2- MICROGLOBULIN
1k5n HLA-B*2709 BOUND TO NONA-PEPTIDE M9
1kgc IMMUNE RECEPTOR
1kpr THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEXMOLECULE HLA-E
1ktl THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEXMOLECULE HLA-E
1lds CRYSTAL STRUCTURE OF MONOMERIC HUMAN BETA-2 -MICROGLOBULIN
1of2 CRYSTAL STRUCTURE OF HLA-B*2709 COMPLEXED WITH THE VASOACTIVE INTESTINAL PEPTIDE TYPE 1 RECEPTOR (VPAC1) PEPTIDE (RESIDUES 400-408)
1qlf MHC CLASS I H-2DB COMPLEXED WITH GLYCOPEPTIDE K3G
1qqd CRYSTAL STRUCTURE OF HLA-CW4, A LIGAND FOR THE KIR2D NATURAL KILLER CELL INHIBITORY RECEPTOR
1qr1 POOR BINDING OF A HER-2/NEU EPITOPE (GP2) TO HLA-A2.1 IS DUE TO A LACK OF INTERACTIONS IN THE CENTER OF THE PEPTIDE
1qrn CRYSTAL STRUCTURE OF HUMAN A6 TCR COMPLEXED WITH HLA-A2 BOUND TO ALTERED HTLV-1 TAX PEPTIDE P6A
1qse STRUCTURE OF HUMAN A6-TCR BOUND TO HLA- A2 COMPLEXED WITH ALTERED HTLV-1 TAX PEPTIDE V7R
1qsf STRUCTURE OF A6-TCR BOUND TO HLA-A2 COMPLEXED WITH ALTERED HTLV-1 TAX PEPTIDE Y8A
1tmc TRUNCATED HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN HLA-AW68 COMPLEXED WITH A DECAMERIC PEPTIDE (EVAPPEYHRK)
2bnq STRUCTURAL AND KINETIC BASIS FOR HIGHTENED IMMUNOGENICITY OF T CELL VACCINES
2clr HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA -A 0201) COMPLEXED WITH A DECAMERIC PEPTIDE FROM CALRETICULIN
2hla HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN AW 68.1 (HLA-AW 68.1, HUMAN LEUCOCYTE ANTIGEN)
3hla HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN A2. 1 (HLA-A2.1 HUMAN LEUCOCYTE ANTIGEN)