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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX WITH STEM-LOOP DNA
 
Authors :  D. R. Ronning, C. Guynet, B. Ton-Hoang, Z. N. Perez, R. Ghirlando, M. Chandler, F. Dyda
Date :  03 Jul 05  (Deposition) - 25 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Rna Recognition Motif, Dna Stem-Loop, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. R. Ronning, C. Guynet, B. Ton-Hoang, Z. N. Perez, R. Ghirlando, M. Chandler, F. Dyda
Active Site Sharing And Subterminal Hairpin Recognition In A New Class Of Dna Transposases.
Mol. Cell V. 20 143 2005
PubMed-ID: 16209952  |  Reference-DOI: 10.1016/J.MOLCEL.2005.07.026
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- D(*CP*CP*CP*CP*TP*AP*GP*CP*TP*TP*TP*AP*GP*CP*TP*AP*TP*GP*GP *GP*GP*A)-3'
    ChainsC, D
    EngineeredYES
    SyntheticYES
 
Molecule 2 - ISHP608 TRANSPOSASE
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPDR32
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificHELICOBACTER PYLORI
    Organism Taxid210

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2A6O)

(-) Sites  (0, 0)

(no "Site" information available for 2A6O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A6O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2A6O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A6O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2A6O)

(-) Exons   (0, 0)

(no "Exon" information available for 2A6O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with Q933Z0_HELPX | Q933Z0 from UniProtKB/TrEMBL  Length:155

    Alignment length:152
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  
         Q933Z0_HELPX     4 AVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL 155
               SCOP domains d2a6oa_ A: ISHP608 transposase                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.eeeeee.hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhh.....hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a6o A   4 AVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL 155
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  

Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q933Z0_HELPX | Q933Z0 from UniProtKB/TrEMBL  Length:155

    Alignment length:152
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  
         Q933Z0_HELPX     4 AVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL 155
               SCOP domains d2a6ob_ B: ISHP608 transposase                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.eeeeee.hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhh.....hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a6o B   4 AVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL 155
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  

Chain C from PDB  Type:DNA  Length:22
                                                      
                 2a6o C   1 CCCCTAGCTTTAGCTATGGGGA  22
                                    10        20  

Chain D from PDB  Type:DNA  Length:22
                                                      
                 2a6o D   1 CCCCTAGCTTTAGCTATGGGGA  22
                                    10        20  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2A6O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A6O)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q933Z0_HELPX | Q933Z0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004803    transposase activity    Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element.
biological process
    GO:0006313    transposition, DNA-mediated    Any process involved in a type of transpositional recombination which occurs via a DNA intermediate.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q933Z0_HELPX | Q933Z02a6m 2vhg 2vic 2vih 2vju 2vjv

(-) Related Entries Specified in the PDB File

2a6m APO STRUCTURE OF THE SAME PROTEIN.