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(-) Description

Title :  INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX
 
Authors :  H. Ohishi, S. Kunisawa, G. Van Der Marel, J. H. Van Boom, A. Rich, A. H. -J. Wang, K. Tomita, T. Hakoshima
Date :  09 Oct 91  (Deposition) - 02 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna, Double Helix, Complexed With N-(2-Aminoethyl)-1, 4- Diaminobutane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ohishi, S. Kunisawa, G. Van Der Marel, J. H. Van Boom, A. Rich, A. H. Wang, K. Tomita, T. Hakoshima
Interaction Between The Left-Handed Z-Dna And Polyamine. The Crystal Structure Of The D(Cg)3 And N-(2-Aminoethyl)-1, 4-Diamino-Butane Complex.
Febs Lett. V. 284 238 1991
PubMed-ID: 2060642  |  Reference-DOI: 10.1016/0014-5793(91)80694-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1MG3Ligand/IonMAGNESIUM ION
2NA1Ligand/IonSODIUM ION
3P241Ligand/Ion1-(AMINOETHYL)AMINO-4-AMINOBUTANE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:2 , DC A:3 , DG A:4 , HOH A:18 , HOH A:20 , HOH A:55 , HOH A:72 , HOH A:73 , HOH A:74 , HOH A:78BINDING SITE FOR RESIDUE P24 A 13
2AC2SOFTWAREDG A:6 , MG A:15 , HOH A:79 , HOH A:80 , HOH A:81 , HOH A:82 , HOH A:83BINDING SITE FOR RESIDUE MG A 14
3AC3SOFTWAREMG A:14 , HOH A:82 , HOH A:83 , HOH A:84 , HOH A:85 , HOH A:86 , HOH A:87BINDING SITE FOR RESIDUE MG A 15
4AC4SOFTWAREHOH B:88 , HOH B:89 , HOH B:90 , HOH B:91 , HOH B:92BINDING SITE FOR RESIDUE MG B 16
5AC5SOFTWAREDC B:9 , HOH B:93 , HOH B:94 , HOH B:95 , HOH B:96 , HOH B:97BINDING SITE FOR RESIDUE NA B 17

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 292D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 292D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:6
                                     
                  292d A  1 CGCGCG  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  292d B  7 CGCGCG 12
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 292D)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  292d
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