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(-) Description

Title :  THE STRUCTURE OF A PUTATIVE MANNOSEPHOSPHATE ISOMERASE FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. E. Cuff, T. Skarina, A. Edwards, A. Savchenko, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  06 Jun 05  (Deposition) - 19 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Mannose 6-Phosphate, Isomerase, Archaeoglobus Fulgidus, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, T. Skarina, A. Edwards, A. Savchenko, A. Joachimiak
The Structure Of A Putative Mannosephosphate Isomerase From Archaeoglobus Fulgidus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANNOSEPHOSPHATE ISOMERASE, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P11
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF0035
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 14)

Asymmetric/Biological Unit (5, 14)
No.NameCountTypeFull Name
1ACY6Ligand/IonACETIC ACID
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4LFR1Ligand/IonBETA-L-FRUCTO-FURANOSE
5MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:93 , PRO A:94 , THR A:95 , GLN A:96 , ASP A:149 , ASP A:151 , PHE A:152 , LYS A:153BINDING SITE FOR RESIDUE LFR A 600
02AC2SOFTWARETRP A:23 , PHE A:123 , TYR A:252 , ALA A:254 , ARG A:270 , HOH A:971BINDING SITE FOR RESIDUE EDO A 800
03AC3SOFTWARESER A:102 , ASP A:103 , PRO A:171 , SER A:187 , HOH A:994BINDING SITE FOR RESIDUE EDO A 801
04AC4SOFTWAREGLY A:110 , GLU A:111 , ALA A:112 , TYR A:164 , LYS A:221 , VAL A:233 , ASP A:235 , LYS A:291 , HOH A:936BINDING SITE FOR RESIDUE ACY A 502
05AC5SOFTWAREGLN A:9 , GLU A:12 , LYS A:28 , TYR A:272 , HOH A:889 , HOH A:921BINDING SITE FOR RESIDUE ACY A 503
06AC6SOFTWAREARG A:170 , PHE A:215 , GLU A:216 , LYS A:218BINDING SITE FOR RESIDUE ACY A 504
07AC7SOFTWAREPHE A:194 , ASN A:196 , ASP A:199 , GLU A:288 , ARG A:289 , HOH A:806BINDING SITE FOR RESIDUE ACY A 505
08AC8SOFTWARETHR A:95 , HIS A:98 , TRP A:120 , GLY A:177 , GLU A:184 , GOL A:700BINDING SITE FOR RESIDUE ACY A 506
09AC9SOFTWAREPHE A:30 , ARG A:31 , GLN A:32 , GLY A:256 , TYR A:257 , HIS A:269 , ARG A:270BINDING SITE FOR RESIDUE ACY A 507
10BC1SOFTWAREARG A:87 , HIS A:98 , HIS A:100 , HIS A:175 , GLU A:184 , ACY A:506 , HOH A:907BINDING SITE FOR RESIDUE GOL A 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZX5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZX5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZX5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZX5)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZX5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
 aligned with O30200_ARCFU | O30200 from UniProtKB/TrEMBL  Length:299

    Alignment length:300
                             1                                                                                                                                                                                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299
         O30200_ARCFU     - -MELPSFIFQAQENLVERPWGGEWIALLKGFRQSGIGESWEFSAHTSRPSTVLVKGQQLSMIELFSKHRDELLGRAAEKFSKFPILVRLIDAASPTQVHVHPSDKAAESLGEAEGGVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNENDWEKVKKVLNTKKVEEFEVKGKKGMAETENFGLEVVDVTGTAEIKTGGVMNILYAAEGYFILRGKETADLHRGYSCLVPASTDSFTVESERGKIVRIYLKV 299
               SCOP domains -d1zx5a1 A:1-299 Putative mannosephosphate isomerase AF0035                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1zx5A01 A:0-216 Jelly Rolls                                                                                                                                                                                              1zx5A02 A:217-299 Jelly Rolls                                                       CATH domains
               Pfam domains --------------PMI_typeI-1zx5A01 A:14-130                                                                                           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eee.....hhhhhhh......eeeeee.........eeee..eeeehhhhhhhhhhhhhhhhh.......eeeeeeee......ee..hhhhhhhh........eeeee....eeeeee....hhhhhhhhhh....hhhh.eeeee.....eeee.....eeee.eeeeeeee.....ee....hhhhhhhhh.....hhhhh.....eee...eeeeeeeeeeeeeee.....eeeeeee..eeee...eeee....eeee.....eeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zx5 A   0 GmELPSFIFQAQENLVERPWGGEWIALLKGFRQSGIGESWEFSAHTSRPSTVLVKGQQLSmIELFSKHRDELLGRAAEKFSKFPILVRLIDAASPTQVHVHPSDKAAESLGEAEGGVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNENDWEKVKKVLNTKKVEEFEVKGKKGmAETENFGLEVVDVTGTAEIKTGGVmNILYAAEGYFILRGKETADLHRGYSCLVPASTDSFTVESERGKIVRIYLKV 299
                             |       9        19        29        39        49        59|       69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219   |   229       239       249       259       269       279       289       299
                             |                                                         60-MSE                                                                                                                                                            223-MSE                  248-MSE                                               
                             1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O30200_ARCFU | O30200)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0004476    mannose-6-phosphate isomerase activity    Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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