1ZMM - JenaLib

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036315	R	74	Q	DEF4_HUMAN	Unclassified	762433303	A/B/C/D	R	11	Q
2	CancerSNP	VAR_DEF4_HUMAN_CCDS5961_1_01 *	R	74	Q	DEF4_HUMAN	Disease (Colorectal cancer)	---	A/B/C/D	R	11	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036315	R	74	Q	DEF4_HUMAN	Unclassified	762433303	A	R	11	Q
2	CancerSNP	VAR_DEF4_HUMAN_CCDS5961_1_01 *	R	74	Q	DEF4_HUMAN	Disease (Colorectal cancer)	---	A	R	11	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036315	R	74	Q	DEF4_HUMAN	Unclassified	762433303	B	R	11	Q
2	CancerSNP	VAR_DEF4_HUMAN_CCDS5961_1_01 *	R	74	Q	DEF4_HUMAN	Disease (Colorectal cancer)	---	B	R	11	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036315	R	74	Q	DEF4_HUMAN	Unclassified	762433303	C	R	11	Q
2	CancerSNP	VAR_DEF4_HUMAN_CCDS5961_1_01 *	R	74	Q	DEF4_HUMAN	Disease (Colorectal cancer)	---	C	R	11	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036315	R	74	Q	DEF4_HUMAN	Unclassified	762433303	D	R	11	Q
2	CancerSNP	VAR_DEF4_HUMAN_CCDS5961_1_01 *	R	74	Q	DEF4_HUMAN	Disease (Colorectal cancer)	---	D	R	11	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 4)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEFENSIN	PS00269	Mammalian defensins signature.	DEF4_HUMAN	65-93	4	A:2-30 B:2-30 C:2-30 D:2-30

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEFENSIN	PS00269	Mammalian defensins signature.	DEF4_HUMAN	65-93	1	A:2-30 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEFENSIN	PS00269	Mammalian defensins signature.	DEF4_HUMAN	65-93	1	- B:2-30 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEFENSIN	PS00269	Mammalian defensins signature.	DEF4_HUMAN	65-93	1	- - C:2-30 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEFENSIN	PS00269	Mammalian defensins signature.	DEF4_HUMAN	65-93	1	- - - D:2-30

Exons (1, 4)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:31
 aligned with DEF4_HUMAN | P12838 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:31
                                    73        83        93 
            DEF4_HUMAN   64 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCT 94
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee. Sec.struct. author
             SAPs(SNPs) (1) ----------Q-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------Q-------------------- SAPs(SNPs) (2)
                    PROSITE -DEFENSIN  PDB: A:2-30        - PROSITE
               Transcript 1 Exon 1.3  PDB: A:1-31           Transcript 1
                  1zmm A  1 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCT 31
                                    10        20        30

Chain B from PDB  Type:PROTEIN  Length:33
 aligned with DEF4_HUMAN | P12838 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:33
                                    73        83        93   
            DEF4_HUMAN   64 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRV 96
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ----------Q---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------Q---------------------- SAPs(SNPs) (2)
                    PROSITE -DEFENSIN  PDB: B:2-30        --- PROSITE
               Transcript 1 Exon 1.3  PDB: B:1-33             Transcript 1
                  1zmm B  1 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRV 33
                                    10        20        30

Chain C from PDB  Type:PROTEIN  Length:31
 aligned with DEF4_HUMAN | P12838 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:31
                                    73        83        93 
            DEF4_HUMAN   64 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCT 94
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee. Sec.struct. author
             SAPs(SNPs) (1) ----------Q-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------Q-------------------- SAPs(SNPs) (2)
                    PROSITE -DEFENSIN  PDB: C:2-30        - PROSITE
               Transcript 1 Exon 1.3  PDB: C:1-31           Transcript 1
                  1zmm C  1 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCT 31
                                    10        20        30

Chain D from PDB  Type:PROTEIN  Length:33
 aligned with DEF4_HUMAN | P12838 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:33
                                    73        83        93   
            DEF4_HUMAN   64 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRV 96
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
           Pfam domains (1) -Defensin_1-1zmmD01 D:2-30    --- Pfam domains (1)
           Pfam domains (2) -Defensin_1-1zmmD02 D:2-30    --- Pfam domains (2)
           Pfam domains (3) -Defensin_1-1zmmD03 D:2-30    --- Pfam domains (3)
           Pfam domains (4) -Defensin_1-1zmmD04 D:2-30    --- Pfam domains (4)
         Sec.struct. author .eeee.......eeeeeeeee..eeeeeeee.. Sec.struct. author
             SAPs(SNPs) (1) ----------Q---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------Q---------------------- SAPs(SNPs) (2)
                    PROSITE -DEFENSIN  PDB: D:2-30        --- PROSITE
               Transcript 1 Exon 1.3  PDB: D:1-33             Transcript 1
                  1zmm D  1 VCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRV 33
                                    10        20        30

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (13, 13)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DEF4_HUMAN | P12838)

biological process
	GO:0019731	antibacterial humoral response	An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
	GO:0019730	antimicrobial humoral response	An immune response against microbes mediated through a body fluid. Examples of this process are seen in the antimicrobial humoral response of Drosophila melanogaster and Mus musculus.
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0050829	defense response to Gram-negative bacterium	Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
	GO:0050830	defense response to Gram-positive bacterium	Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0050832	defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0031640	killing of cells of other organism	Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
cellular component
	GO:0005796	Golgi lumen	The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
	GO:0042582	azurophil granule	Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1zmm)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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	1zmm
		Family and Domain Information	:	ProDom \| SYSTERS
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Access by UniProt ID/Accession number
	DEF4_HUMAN \| P12838
		Comparative Protein Structure Models	:	ModBase
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)