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(-) Description

Title :  CRYSTAL STRUCTURE OF RV2827C PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  R. Janowski, S. Panjikar, J. Mueller-Dieckmann, M. S. Weiss, Tb Struc Genomics Consortium (Tbsgc)
Date :  19 Apr 05  (Deposition) - 02 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rv2827C, Hypothetical Protein, Winged-Helix, Helix-Turn-Helix, Auto- Rickshaw, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Janowski, S. Panjikar, A. N. Eddine, S. H. Kaufmann, M. S. Weiss
Structural Analysis Reveals Dna Binding Properties Of Rv2827C, A Hypothetical Protein From Mycobacterium Tuberculosis.
J Struct Funct Genomics V. 10 137 2009
PubMed-ID: 19184528  |  Reference-DOI: 10.1007/S10969-009-9060-4

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN RV2827C
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: ROSETTA(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RV2827C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FMT15Ligand/IonFORMIC ACID
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA2Ligand/IonSODIUM ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2FMT9Ligand/IonFORMIC ACID
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FMT6Ligand/IonFORMIC ACID
3MPD-1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA-1Ligand/IonSODIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:164 , ASP A:206 , ASP A:210 , HOH B:752BINDING SITE FOR RESIDUE NA A 401
02AC2SOFTWAREHOH A:763 , ARG B:164 , ASP B:206 , ASP B:210BINDING SITE FOR RESIDUE NA B 402
03AC3SOFTWAREPRO B:83 , TYR B:84 , SER B:105 , GLN B:116 , PRO B:117BINDING SITE FOR RESIDUE ACT B 601
04AC4SOFTWARETHR A:40 , GLY A:43 , CYS A:44 , GLY A:45 , SER B:140BINDING SITE FOR RESIDUE ACT B 602
05AC5SOFTWAREALA A:170 , MET B:0 , ALA B:79 , SER B:81BINDING SITE FOR RESIDUE MPD A 501
06AC6SOFTWARETHR B:225 , TRP B:228 , ARG B:251 , HIS B:252 , THR B:253 , HOH B:738BINDING SITE FOR RESIDUE FMT B 701
07AC7SOFTWAREPRO B:145 , GLY B:222 , ARG B:223 , PRO B:224 , HOH B:848BINDING SITE FOR RESIDUE FMT B 702
08AC8SOFTWAREVAL A:141 , ARG A:143BINDING SITE FOR RESIDUE FMT A 703
09AC9SOFTWARETYR A:84 , SER A:105 , GLN A:116BINDING SITE FOR RESIDUE FMT A 704
10BC1SOFTWARETRP A:14 , HOH A:766 , VAL B:141 , ARG B:143 , HOH B:869BINDING SITE FOR RESIDUE FMT B 705
11BC2SOFTWAREPRO A:145 , GLY A:222 , ARG A:223 , HOH A:794BINDING SITE FOR RESIDUE FMT A 707
12BC3SOFTWAREALA B:249 , GLU B:254 , SER B:266BINDING SITE FOR RESIDUE FMT B 708
13BC4SOFTWARETHR B:259 , ARG B:260 , HOH B:813 , HOH B:817BINDING SITE FOR RESIDUE FMT B 709
14BC5SOFTWARETHR A:225 , TRP A:228 , ARG A:251 , HIS A:252 , THR A:253 , HOH A:738BINDING SITE FOR RESIDUE FMT A 710
15BC6SOFTWAREPRO A:127 , ARG A:190BINDING SITE FOR RESIDUE FMT A 711
16BC7SOFTWAREASP A:118 , GLY A:119 , SER A:212 , ARG A:215 , HOH A:752BINDING SITE FOR RESIDUE FMT A 712
17BC8SOFTWAREARG A:17 , GLU A:41 , ALA A:42 , HOH A:768 , HOH A:780BINDING SITE FOR RESIDUE FMT A 713
18BC9SOFTWAREGLY A:111 , HIS A:203 , SER B:20BINDING SITE FOR RESIDUE FMT A 714
19CC1SOFTWAREARG B:88 , HOH B:787BINDING SITE FOR RESIDUE FMT B 715
20CC2SOFTWAREVAL A:66 , LYS A:67 , PRO A:132 , ASP A:133 , GLY A:134BINDING SITE FOR RESIDUE FMT A 716

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZEL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZEL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZEL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZEL)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZEL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
 aligned with Q7D6H9_MYCTO | Q7D6H9 from UniProtKB/TrEMBL  Length:315

    Alignment length:296
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308      
         Q7D6H9_MYCTO    19 SSVVSPAGADRRIPTWASRVVSGLARDRPVVVTKEDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLPVKGTWAFIPPGEAAISDPYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHSRDRGESVWAPEYQLVDELVVPLXRVIGK 314
               SCOP domains --d1zela1 A:1-82 Hypothetical protein Rv2827c                                       d1zela2 A:83-294 Hypothetical protein Rv2827c                                                                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhhhhhhhhhhhh...eehhhhhhhhhhh....hhhhhhhhhhhh..eee.....eeee......eee..hhhhhhhhhhh.....eehhhhhhhhhh.........eeee.......hhhhh..eeee.......hhhhhh.hhhhhhhh..............hhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhh.........eee.....---...eeehhh.eee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zel A  -1 AMVVSPAGADRRIPTWASRVVSGLARDRPVVVTKEDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLPVKGTWAFIPPGEAAISDPYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHS---GESVWAPEYQLVDELVVPLLRVIGK 294
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       | - |     278       288      
                                                                                                                                                                                                                                                                                                     266 270                        


Chain B from PDB  Type:PROTEIN  Length:295
 aligned with Q7D6H9_MYCTO | Q7D6H9 from UniProtKB/TrEMBL  Length:315

    Alignment length:298
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307        
         Q7D6H9_MYCTO    18 SSSVVSPAGADRRIPTWASRVVSGLARDRPVVVTKEDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLPVKGTWAFIPPGEAAISDPYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHSRDRGESVWAPEYQLVDELVVPLXRVIGKA 315
               SCOP domains d1zelb1 B:-2-82 Hypothetical protein Rv2827c                                         d1zelb2 B:83-295 Hypothetical protein Rv2827c                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.........hhhhhhhhhhhhhhh...eehhhhhhhhhhh....hhhhhhhhhhhh..eee.....eeee......eee..hhhhhhhhhhh.....eehhhhhhhhhh.........eeee..........hhh.eeee..............hhhhhhhh..............hhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhh.........eee.....---...eeehhh.eee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zel B  -2 GAMVVSPAGADRRIPTWASRVVSGLARDRPVVVTKEDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLPVKGTWAFIPPGEAAISDPYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHS---GESVWAPEYQLVDELVVPLLRVIGKA 295
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257        |-  |    277       287        
                                                                                                                                                                                                                                                                                                      266 270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZEL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZEL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZEL)

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