1Z6G - JenaLib

Title :   CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM PLASMODIUM FALCIPARUM

Authors :   A. M. Mulichak, J. Lew, J. Artz, J. Choe, J. R. Walker, Y. Zhao, M. Sundstr C. Arrowsmith, A. Edwards, A. Bochkarev, R. Hui, M. Gao, Structural G Consortium (Sgc)

Date :   22 Mar 05 (Deposition) - 05 Apr 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.18

Chains :   Asym./Biol. Unit : A

Keywords :   Guanylate Kinase, Structural Genomics, Sgc, Structural Genomics Consortium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
PubMed-ID: 17125854 | Reference-DOI: 10.1016/J.MOLBIOPARA.2006.10.011

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:13 , GLY A:14 , VAL A:15 , GLY A:16 , LYS A:17 , GLY A:18 , GLU A:101	BINDING SITE FOR RESIDUE SO4 A 400
2	AC2	SOFTWARE	ARG A:41 , LYS A:42 , ASN A:79 , HOH A:604	BINDING SITE FOR RESIDUE SO4 A 401
3	AC3	SOFTWARE	LYS A:43 , LYS A:48 , GLU A:49 , HOH A:522 , HOH A:586	BINDING SITE FOR RESIDUE SO4 A 402
4	AC4	SOFTWARE	SER A:13 , TYR A:76 , LEU A:136 , ARG A:139 , ASN A:140 , HOH A:616	BINDING SITE FOR RESIDUE SO4 A 403
5	AC5	SOFTWARE	ARG A:135	BINDING SITE FOR RESIDUE SO4 A 404
6	AC6	SOFTWARE	PRO A:12 , SER A:13 , ASP A:74 , ASN A:75 , ASN A:103 , ASN A:105 , GLN A:153 , LEU A:154 , GLU A:157 , HOH A:507 , HOH A:635	BINDING SITE FOR RESIDUE EPE A 430

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q8I2M1_PLAF7 | Q8I2M1 from UniProtKB/TrEMBL  Length:199

    Alignment length:191
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192 
         Q8I2M1_PLAF7     3 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLNSYIHL 193
               SCOP domains d1z6ga_ A: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 1z6gA01 A:3-35,A:96-191          1z6gA02 A:36-95 Guanylate Kinase phosphate binding domain   1z6gA01 A:3-35,A:96-191 P-loop containing nucleotide triphosphate hydrolases                    -- CATH domains
               Pfam domains Guanylate_kin-1z6gA01 A:3-189                                                                                                                                                              ---- Pfam domains
         Sec.struct. author ....eeee.....hhhhhhhhhhhhh...eee...ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeeeehhhhhhhhh........eeeeee..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z6g A   3 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLNSYIHL 193
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (2, 2)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q8I2M1_PLAF7 | Q8I2M1)

molecular function
	GO:0004385	guanylate kinase activity	Catalysis of the reaction: ATP + GMP = ADP + GDP.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046710	GDP metabolic process	The chemical reactions and pathways involving GDP, guanosine 5'-diphosphate.
	GO:0046037	GMP metabolic process	The chemical reactions and pathways involving GMP, guanosine monophosphate.
	GO:0006186	dGDP phosphorylation	The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006163	purine nucleotide metabolic process	The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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Description