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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN SO0799 FROM SHEWANELLA ONEIDENSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SOR12.
 
Authors :  A. P. Kuzin, S. Vorobiev, Y. Chen, F. Forouhar, T. Acton, L. -C. Ma, R. Xia G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomic Consortium (Nesg)
Date :  14 Feb 05  (Deposition) - 08 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  D,J  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  G,I  (1x)
Keywords :  Sor12, Q8E1N8, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, S. Vorobiev, Y. Chen, F. Forouhar, T. Acton, L. -C. Ma, R. Xiao, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Hypothetical Protein So0799 From Shewanella Oneidensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN SO0799
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: E.COLI BL21(DE3).MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): A      H  
Biological Unit 2 (1x):  BC       
Biological Unit 3 (1x):    D     J
Biological Unit 4 (1x):     EF    
Biological Unit 5 (1x):       G I 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 60)

Asymmetric Unit (1, 60)
No.NameCountTypeFull Name
1MSE60Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1YUD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YUD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YUD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YUD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YUD)

(-) Exons   (0, 0)

(no "Exon" information available for 1YUD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yuda1 A:1-158 Hypothetical protein SO0799                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....eeeeeee............eeeeeeee....eeeee....eeeeeeee..eeeeee.....eeeeee.......ee..eee....eeeeee....eeeeeeee....hhhhh...hhhhhhhh...hhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud A   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            |                                                           62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           
                            1-MSE                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudb_ B: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....eeeeeee............eeeeeeee....eeeeee...eeeeeeee..eeeeee.....eeeeee............ee....eeeeee....eeeeeeee........eee.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud B   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain C from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudc_ C: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....eeeeeee............eeeeeee.....eeeeee...eeeeeeee..eeeeee.....eeeeee..........eeee....eeeeee.....eeeeeee....hhh.eee...hhhhhh...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud C   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudd_ D: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh........eeeeeee............eeeeeee....eeeeeee...eeeeeeee..eeeeee.....eeeeee..........eeee....eeeeee.....eeeeeee........eee.hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud D   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain E from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yude_ E: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....ee...ee............eeeeee...............eeeeeeee..ee..ee.....ee..ee..........eeee....ee..ee.....eeeeeee............hhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud E   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain F from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudf_ F: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....ee..................eeee.......eeeeee...eeeeeeee..eeeeee.....eee.............eeee....eeeeee.....eeeeee.....hhh.eee...hhhhhh...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud F   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain G from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudg_ G: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.........eeee.................eeeee.....eeee.....eeeeeeee...eeeee.....eeeee...........eeee....eeee.......eeeeeee..............hhhhhh...hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud G   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain H from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudh_ H: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.ee.....eeeeeee............eeeeeeee....eeeeee...eeeeeeee..eeeeee.....eeeeee.......ee.eeee....eeeeee....eeeeeeee....hhh.eee.hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud H   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain I from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudi_ I: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..ee.....eee................eeeeeeee.......eee...eeeeeeee....eeee.........ee.......ee.eeee....eeee......eeeeeeee....hhh.eee...hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud I   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE           


Chain J from PDB  Type:PROTEIN  Length:158
 aligned with Q8EIN8_SHEON | Q8EIN8 from UniProtKB/TrEMBL  Length:160

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         Q8EIN8_SHEON     1 MQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYPQHKAVVQKLSRPE 158
               SCOP domains d1yudj_ J: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---Cupin_5-1yudJ01 J:4-136                                                                                                              ---------------------- Pfam domains (1)
           Pfam domains (2) ---Cupin_5-1yudJ02 J:4-136                                                                                                              ---------------------- Pfam domains (2)
           Pfam domains (3) ---Cupin_5-1yudJ03 J:4-136                                                                                                              ---------------------- Pfam domains (3)
           Pfam domains (4) ---Cupin_5-1yudJ04 J:4-136                                                                                                              ---------------------- Pfam domains (4)
           Pfam domains (5) ---Cupin_5-1yudJ05 J:4-136                                                                                                              ---------------------- Pfam domains (5)
           Pfam domains (6) ---Cupin_5-1yudJ06 J:4-136                                                                                                              ---------------------- Pfam domains (6)
           Pfam domains (7) ---Cupin_5-1yudJ07 J:4-136                                                                                                              ---------------------- Pfam domains (7)
           Pfam domains (8) ---Cupin_5-1yudJ08 J:4-136                                                                                                              ---------------------- Pfam domains (8)
           Pfam domains (9) ---Cupin_5-1yudJ09 J:4-136                                                                                                              ---------------------- Pfam domains (9)
          Pfam domains (10) ---Cupin_5-1yudJ10 J:4-136                                                                                                              ---------------------- Pfam domains (10)
         Sec.struct. author ..hhhhhhhhh..ee.....ee.eeee............eeeeeeee....eeeeee...eeeeeeee..eeeeee.....eeeeee..........eeee....eeeeee....eeeeeeee....hhh.eee...hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yud J   1 mQNADDFIKFLELEQHVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEmWYFHAGQSLTIYmISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAmNQDGFSLVGCmVSPGFTFDDFELFSQEALLAmYPQHKAVVQKLSRPE 158
                            |       10        20        30        40        50        60 |      70    |   80        90       100       110|      120 |     130       140  |    150        
                            1-MSE                                                       62-MSE       75-MSE                             111-MSE    122-MSE              143-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YUD)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (Q8EIN8_SHEON | Q8EIN8)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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