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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN PFU-1806301-001 FROM PYROCOCCUS FURIOSUS
 
Authors :  L. Huang, Z. -J. Liu, D. Lee, W. Tempel, J. Chang, M. Zhao, J. Habel, H. Xu, L. Chen, D. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  23 Dec 04  (Deposition) - 22 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (4x)
Biol. Unit 2:  A,B,C,D  (2x)
Keywords :  Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Psi, Conserved Hypothetical Protein, Pyrococcus Furiosus, Hyperthermophile, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Huang, Z. -J. Liu, D. Lee, W. Tempel, J. Chang, M. Zhao, J. Habel, H. Xu, L. Chen, D. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, J. P. Rose, B. -C. Wang
Conserved Hypothetical Protein Pfu-1806301-001 From Pyrococcus Furiosus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (4x): ABCD
Biological Unit 2 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1YCY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YCY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YCY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YCY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YCY)

(-) Exons   (0, 0)

(no "Exon" information available for 1YCY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:62
 aligned with Q8TZN2_PYRFU | Q8TZN2 from UniProtKB/TrEMBL  Length:71

    Alignment length:66
                                    14        24        34        44        54        64      
          Q8TZN2_PYRFU    5 SLLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWIMLL 70
               SCOP domains d1ycya1 A:5-70 Hypot    hetical protein PF1955                     SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh..eeeeee.----.eeeeeee...eeeeeeeee..eeeeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1ycy A  5 SLLEKVLKEWKGHKVAVSVG----FTGTLEDFDEEVILLKDVVDVIGNRGKQmLIGLEDINWImLL 70
                                    14        24    |   34        44        54  |     64   |  
                                              24   29                          57-MSE     68-MSE


Chain B from PDB  Type:PROTEIN  Length:62
 aligned with Q8TZN2_PYRFU | Q8TZN2 from UniProtKB/TrEMBL  Length:71

    Alignment length:66
                                    14        24        34        44        54        64      
          Q8TZN2_PYRFU    5 SLLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWIMLL 70
               SCOP domains d1ycyb_ B: automated     matches                                   SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh..eeeeee.----.eeeeeee...eeeeeeee....eeeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1ycy B  5 SLLEKVLKEWKGHKVAVSVG----FTGTLEDFDEEVILLKDVVDVIGNRGKQmLIGLEDINWImLL 70
                                    14        24    |   34        44        54  |     64   |  
                                              24   29                          57-MSE     68-MSE


Chain C from PDB  Type:PROTEIN  Length:62
 aligned with Q8TZN2_PYRFU | Q8TZN2 from UniProtKB/TrEMBL  Length:71

    Alignment length:66
                                    14        24        34        44        54        64      
          Q8TZN2_PYRFU    5 SLLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWIMLL 70
               SCOP domains d1ycyc_ C: automated     matches                                   SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh..eeeeee.----.eeeeeee...eeeeeeee....eeeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1ycy C  5 SLLEKVLKEWKGHKVAVSVG----FTGTLEDFDEEVILLKDVVDVIGNRGKQmLIGLEDINWImLL 70
                                    14        24    |   34        44        54  |     64   |  
                                              24   29                          57-MSE     68-MSE


Chain D from PDB  Type:PROTEIN  Length:62
 aligned with Q8TZN2_PYRFU | Q8TZN2 from UniProtKB/TrEMBL  Length:71

    Alignment length:66
                                    14        24        34        44        54        64      
          Q8TZN2_PYRFU    5 SLLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWIMLL 70
               SCOP domains d1ycyd_ D: automated     matches                                   SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
           Pfam domains (1) DUF3202-1ycyD01 D:5-    70                                         Pfam domains (1)
           Pfam domains (2) DUF3202-1ycyD02 D:5-    70                                         Pfam domains (2)
           Pfam domains (3) DUF3202-1ycyD03 D:5-    70                                         Pfam domains (3)
           Pfam domains (4) DUF3202-1ycyD04 D:5-    70                                         Pfam domains (4)
         Sec.struct. author hhhhhhhhhhh..eeeeee.----.eeeeeee...eeeeeeee....eeeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1ycy D  5 SLLEKVLKEWKGHKVAVSVG----FTGTLEDFDEEVILLKDVVDVIGNRGKQmLIGLEDINWImLL 70
                                    14        24    |   34        44        54  |     64   |  
                                              24   29                          57-MSE     68-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YCY)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF3202] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1YCY)

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