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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN FROM PYROCOCCUS FURIOSUS PFU-1581948-001
 
Authors :  D. Lee, L. Chen, D. Nguyen, B. D. Dillard, W. Tempel, J. Habel, W. Zhou, S. L. -L. C. Kelley, Z. -J. Liu, D. Lin, H. Zhang, J. Praissman, S. Bridger, R. C. Hopkins, F. E. Jenney Jr. , H. -S. Lee, T. Li, F. L. Poole Ii, C. Sha F. J. Sugar, M. W. W. Adams, J. P. Rose, B. -C. Wang, Southeast Collabor Structural Genomics (Secsg)
Date :  21 Dec 04  (Deposition) - 01 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Conserved Hypothetical Protein, Pyrococcus Furiosus, Hyperthermophile, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Lee, L. Chen, D. Nguyen, B. D. Dillard, W. Tempel, J. Habel, W. Zhou, S. -H. Chang, L. -L. C. Kelley, Z. -J. Liu, D. Lin, H. Zhang, J. Praissman S. Bridger, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr. , H. -S. Lee, T. Li F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, J. P. Rose, B. -C. Wan
Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-1581948-001
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHORISMATE MUTASE
    Chains: A
    EC Number: 5.4.99.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1UNX3Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1UNX3Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1UNX6Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:25 , LEU A:67 , SER A:70BINDING SITE FOR RESIDUE UNX A 101
2AC2SOFTWAREASP A:45 , ARG A:48BINDING SITE FOR RESIDUE UNX A 102
3AC3SOFTWARELYS A:24 , GLU A:50 , ARG A:60BINDING SITE FOR RESIDUE UNX A 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YBZ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:76
 aligned with Q8U098_PYRFU | Q8U098 from UniProtKB/TrEMBL  Length:76

    Alignment length:76
                             1                                                                          
                             |       9        19        29        39        49        59        69      
          Q8U098_PYRFU    - -MTTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQR 75
               SCOP domains --d1ybza1 A:2-75 mono-domain chorismate mutase                               SCOP domains
               CATH domains 1ybzA00 A:0-75 Chorismate Mutase Domain, subunit A                           CATH domains
               Pfam domains --------CM_2-1ybzA01 A:8-75                                                  Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  1ybz A  0 GSTTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQR 75
                                     9        19        29        39        49        59        69
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: CM_2] (2)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8U098_PYRFU | Q8U098)
molecular function
    GO:0004106    chorismate mutase activity    Catalysis of the reaction: chorismate = prephenate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0046417    chorismate metabolic process    The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.

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  1ybz
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