1Y12 - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF A HEMOLYSIN-COREGULATED PROTEIN FROM PSEUDOMONAS AERUGINOSA

Authors :   M. E. Cuff, M. Zhou, A. Joachimiak, Midwest Center For Structural G (Mcsg)

Date :   16 Nov 04 (Deposition) - 25 Jan 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,C  (3x)
Biol. Unit 2: B  (4x)
Biol. Unit 3: B  (6x)

Keywords :   Pseudomonas Aeruginosa, Hemolysin-Corregulation, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. D. Mougous, M. E. Cuff, S. Raunser, A. Shen, M. Zhou, C. A. Gifford, A. L. Goodman, G. Joachimiak, C. L. Ordonez, S. Lory, T. Walz, A. Joachimiak, J. J. Mekalanos
A Virulence Locus Of Pseudomonas Aeruginosa Encodes A Protein Secretion Apparatus.
Science V. 312 1526 2006
PubMed-ID: 16763151 | Reference-DOI: 10.1126/SCIENCE.1128393

Molecule 1 - HYPOTHETICAL PROTEIN PA0085
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PA0085
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA PAO1
	Organism Taxid	:	208964
	Strain	:	PA01

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (3x)	:	A		C
Biological Unit 2 (4x)	:		B
Biological Unit 3 (6x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 18)

No.	Name	Count	Type	Full Name
1	MSE	18	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 36)

No.	Name	Count	Type	Full Name
1	MSE	36	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 36)

No.	Name	Count	Type	Full Name
1	MSE	36	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1Y12)

(no "SS Bond" information available for 1Y12)

Asymmetric Unit

No.	Residues
1	Gly C:116	-	Gly C:117

(no "SAP(SNP)/Variant" information available for 1Y12)

(no "PROSITE Motif" information available for 1Y12)

(no "Exon" information available for 1Y12)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:160
 aligned with HCP1_PSEAE | Q9I747 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
           HCP1_PSEAE     2 AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
               SCOP domains d1y12a1 A:2-162 Hemolysin-corregulated prote in 1, Hcp1                                                                                                           SCOP domains
               CATH domains 1y12A00 A:2-162 Hypothetical protein pa0085                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...............eeeeeeeeeeee.........-....eee..eeeeee...hhhhhhhhhhhh..eeeeeeeee..........eeeeeeeeeeeeee..........eeeeeeeeeeeeeee.............eeeeee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y12 A   2 AVDmFIKIGDVKGESKDKTHAEEIDVLAWSWGmSQSGSmHmGGG-GAGKVNVQDLSFTKYIDKSTPNLmmACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
                               |    11        21        31  |     41|  | |  51        61        71        81        91       101       111       121       131       141       151       161 
                               |                           34-MSE | | 45 |                     70-MSE                                                                                        
                               5-MSE                             40-MSE 47                      71-MSE                                                                                       
                                                                   42-MSE

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with HCP1_PSEAE | Q9I747 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
           HCP1_PSEAE     2 AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
               SCOP domains d1y12b_ B: Hemolysin-corregulated protein      1, Hcp1                                                                                                            SCOP domains
               CATH domains 1y12B00 B:2-162 Hypothetical protein pa00     85                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...............eeeeeee..eee......-----...eee..eeeeee...hhhhhhhhhhhh..eeeeeeeee..........eeeeeeeeeeeeee..........eeeeeeeeeeeeeee.............eeeeee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y12 B   2 AVDmFIKIGDVKGESKDKTHAEEIDVLAWSWGmSQSGSmHm-----AGKVNVQDLSFTKYIDKSTPNLmmACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
                               |    11        21        31  |     41|     | 51        61        71        81        91       101       111       121       131       141       151       161 
                               5-MSE                       34-MSE | |    48                    70-MSE                                                                                        
                                                                 40-MSE                         71-MSE                                                                                       
                                                                   42-MSE

Chain C from PDB  Type:PROTEIN  Length:161
 aligned with HCP1_PSEAE | Q9I747 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
           HCP1_PSEAE     2 AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
               SCOP domains d1y12c_ C: Hemolysin-corregulated protein 1, Hcp1                                                                                                                 SCOP domains
               CATH domains 1y12C00 C:2-162 Hypothetical protein pa0085                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...............ee..eee..eee..............eee..eeeeee...hhhhhhhhhhhh..eeeeeeeee..........eeeeeeeeeeeeeeeee.......eeeeeeeeeeeeeee.............eeeeee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y12 C   2 AVDmFIKIGDVKGESKDKTHAEEIDVLAWSWGmSQSGSmHmGGGGGAGKVNVQDLSFTKYIDKSTPNLmmACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA 162
                               |    11        21        31  |     41|       51        61        71        81        91       101       111       121       131       141       151       161 
                               5-MSE                       34-MSE | |                          70-MSE                                                                                        
                                                                 40-MSE                         71-MSE                                                                                       
                                                                   42-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All beta proteins (24004)

Fold: Hcp1-like (3)

Superfamily: Hcp1-like (3)

Family: Hcp1-like (1)

Protein domain: Hemolysin-corregulated protein 1, Hcp1 (1)

Pseudomonas aeruginosa [TaxId: 287] (1)

1a	d1y12a1	A:2-162
1b	d1y12b_	B:
1c	d1y12c_	C:

Asymmetric Unit

Classes(

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Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Pnp Oxidase; Chain A (68)

Homologous Superfamily: Hypothetical protein pa0085 (1)

Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pa01. (1)

1a	1y12A00	A:2-162
1b	1y12C00	C:2-162
1c	1y12B00	B:2-162

(no "Pfam Domain" information available for 1Y12)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (HCP1_PSEAE | Q9I747)

cellular component
	GO:0005576		extracellular region		The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Sites
(no "Sites" information available for 1y12)

	Cis Peptide Bonds
		Gly C:116 - Gly C:117	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	1y12
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Description

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Ligands, Modified Residues, Ions (1, 18)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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