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(-) Description

Title :  NMR STRUCTURE OF C345C (NTR) DOMAIN OF C5 OF COMPLEMENT
 
Authors :  J. Bramham, C. -T. Thai, D. C. Soares, D. Uhrin, R. T. Ogata, P. N. Barlow
Date :  30 Oct 04  (Deposition) - 21 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (40x)
Keywords :  Ob Fiold, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Bramham, C. -T. Thai, D. C. Soares, D. Uhrin, R. T. Ogata, P. N. Barlow
Functional Insights From The Structure Of The Multifunctional C345C Domain Of C5 Of Complement
J. Biol. Chem. V. 280 10636 2005
PubMed-ID: 15598652  |  Reference-DOI: 10.1074/JBC.M413126200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COMPLEMENT C5
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainORIGAMI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentC345C DOMAIN
    GeneC5
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure (40x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XWE)

(-) Sites  (0, 0)

(no "Site" information available for 1XWE)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:1514 -A:1588
2A:1535 -A:1658

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XWE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XWE)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NTRPS50189 NTR domain profile.CO5_HUMAN1532-1676  1A:1514-1658

(-) Exons   (5, 5)

NMR Structure (5, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000002236422ENSE00000806456chr9:123812554-12381246095CO5_HUMAN1-22220--
1.3ENST000002236423ENSE00000724393chr9:123808661-123808469193CO5_HUMAN22-86650--
1.4ENST000002236424ENSE00000724389chr9:123805444-123805282163CO5_HUMAN87-141550--
1.5ENST000002236425ENSE00000724383chr9:123800229-12380015971CO5_HUMAN141-164240--
1.6aENST000002236426aENSE00000724378chr9:123797172-12379708192CO5_HUMAN165-195310--
1.7ENST000002236427ENSE00000724375chr9:123794473-12379439183CO5_HUMAN195-223290--
1.8ENST000002236428ENSE00000724372chr9:123792765-12379267591CO5_HUMAN223-253310--
1.9ENST000002236429ENSE00000724368chr9:123789552-123789438115CO5_HUMAN253-291390--
1.11ENST0000022364211ENSE00000724364chr9:123787858-123787732127CO5_HUMAN292-334430--
1.12ENST0000022364212ENSE00000806455chr9:123785797-123785682116CO5_HUMAN334-372390--
1.13ENST0000022364213ENSE00000724360chr9:123783972-123783787186CO5_HUMAN373-434620--
1.14ENST0000022364214ENSE00000724358chr9:123782457-123782254204CO5_HUMAN435-502680--
1.15ENST0000022364215ENSE00000724356chr9:123780130-123779921210CO5_HUMAN503-572700--
1.16ENST0000022364216ENSE00000724353chr9:123779789-123779640150CO5_HUMAN573-622500--
1.17ENST0000022364217ENSE00000724350chr9:123778661-123778532130CO5_HUMAN623-666440--
1.18ENST0000022364218ENSE00000724347chr9:123777539-12377747763CO5_HUMAN666-687220--
1.19ENST0000022364219ENSE00000724343chr9:123776348-123776151198CO5_HUMAN687-753670--
1.20ENST0000022364220ENSE00000724339chr9:123770776-12377068691CO5_HUMAN753-783310--
1.21aENST0000022364221aENSE00000724335chr9:123769255-12376918274CO5_HUMAN783-808260--
1.22ENST0000022364222ENSE00000724332chr9:123768336-123768197140CO5_HUMAN808-854470--
1.24ENST0000022364224ENSE00000724329chr9:123760052-123759825228CO5_HUMAN855-930760--
1.25ENST0000022364225ENSE00000724327chr9:123758578-12375851861CO5_HUMAN931-951210--
1.26ENST0000022364226ENSE00000724325chr9:123753558-12375346990CO5_HUMAN951-981310--
1.27bENST0000022364227bENSE00000724322chr9:123752058-123751846213CO5_HUMAN981-1052720--
1.28ENST0000022364228ENSE00000724320chr9:123751399-12375132476CO5_HUMAN1052-1077260--
1.29ENST0000022364229ENSE00000724317chr9:123745092-123744933160CO5_HUMAN1077-1130540--
1.30aENST0000022364230aENSE00000724315chr9:123744217-12374412296CO5_HUMAN1131-1162320--
1.31ENST0000022364231ENSE00000724313chr9:123742532-123742361172CO5_HUMAN1163-1220580--
1.33ENST0000022364233ENSE00000724312chr9:123739183-123738978206CO5_HUMAN1220-1288690--
1.34ENST0000022364234ENSE00000724311chr9:123737209-123737057153CO5_HUMAN1289-1339510--
1.35ENST0000022364235ENSE00000724308chr9:123734270-12373420863CO5_HUMAN1340-1360210--
1.36ENST0000022364236ENSE00000724304chr9:123732529-12373244882CO5_HUMAN1361-1388280--
1.37ENST0000022364237ENSE00000724301chr9:123731396-12373133958CO5_HUMAN1388-1407200--
1.38ENST0000022364238ENSE00000724299chr9:123726016-123725914103CO5_HUMAN1407-1441350--
1.39ENST0000022364239ENSE00000724298chr9:123725245-12372517175CO5_HUMAN1442-1466250--
1.40aENST0000022364240aENSE00000724295chr9:123725054-123724949106CO5_HUMAN1467-1502360--
1.41ENST0000022364241ENSE00000724292chr9:123723843-12372376084CO5_HUMAN1502-1530291A:1508-15125
1.42ENST0000022364242ENSE00000724291chr9:123722615-12372252690CO5_HUMAN1530-1560311A:1512-154231
1.43aENST0000022364243aENSE00000724290chr9:123719646-12371956384CO5_HUMAN1560-1588291A:1542-157029
1.44ENST0000022364244ENSE00000724289chr9:123716146-123716008139CO5_HUMAN1588-1634471A:1570-161647
1.45ENST0000022364245ENSE00000806454chr9:123715146-123714616531CO5_HUMAN1634-1676431A:1616-165843

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with CO5_HUMAN | P01031 from UniProtKB/Swiss-Prot  Length:1676

    Alignment length:151
                                  1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665      1675 
           CO5_HUMAN   1526 KCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676
               SCOP domains d1xwea_ A: Complement C5 domain                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------NTR-1xweA01 A:1532-1642                                                                                        ---------------- Pfam domains
         Sec.struct. author .................................eeeeeeeeeeee...eeeeeeeeeeeee..........eeeeeee............eeeeee......................eeeee...........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------NTR  PDB: A:1514-1658 UniProt: 1532-1676                                                                                                          PROSITE
           Transcript 1 (1) 1.41 -----------------------------Exon 1.43a  PDB: A:1542-1570 ---------------------------------------------Exon 1.45  PDB: A:1616-1658                 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.42  PDB: A:1512-1542    ---------------------------Exon 1.44  PDB: A:1570-1616 UniProt: 1588-1634 ------------------------------------------ Transcript 1 (2)
                1xwe A 1508 GSHMADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNASFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1658
                                  1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627      1637      1647      1657 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XWE)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Family: NTR (13)
1aNTR-1xweA01A:1532-1642

(-) Gene Ontology  (29, 29)

NMR Structure(hide GO term definitions)
Chain A   (CO5_HUMAN | P01031)
molecular function
    GO:0008009    chemokine activity    The function of a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria.
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0000187    activation of MAPK activity    The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
    GO:0060326    cell chemotaxis    The directed movement of a motile cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0010760    negative regulation of macrophage chemotaxis    Any process that decreases the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0090197    positive regulation of chemokine secretion    Any process that increases the rate, frequency or extent of chemokine secretion, the regulated release of chemokines from a cell.
    GO:0098779    positive regulation of macromitophagy in response to mitochondrial depolarization    The macromitophagy process that is triggered by a detection of the loss of mitochondrial membrane potential.
    GO:0010575    positive regulation of vascular endothelial growth factor production    Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005579    membrane attack complex    A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO5_HUMAN | P010311cfa 1kjs 3cu7 3hqa 3hqb 3kls 3km9 3prx 3pvm 4a5w 4e0s 4p39 4uu9 5b4p 5b71 5hcc 5hcd 5hce 5i5k

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