1XV2 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION SIMILAR TO ALPHA-ACETOLACTATE DECARBOXYLASE FROM STAPHYLOCOCCUS AUREUS

Authors :   N. E. C. Duke, R. Zhang, P. Quartey, F. Collart, D. Holzle, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)

Date :   26 Oct 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Alpha-Acetolactate, Staphylococcus Aureus, Structural Genomics, Mcsg, Midwest Center For Structural Genomics, Psi, Protein Structure Initiative, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. E. C. Duke, R. Zhang, P. Quartey, F. Collart, D. Holzle, A. Joachimiak
Crystal Structure Of A Hypothetical Protein Similar To Alpha-Acetolactate
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL PROTEIN, SIMILAR TO ALPHA- ACETOLACTATE DECARBOXYLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.1.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PMCSG7
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
	Organism Taxid	:	46170
	Strain	:	SUBSP. AUREUS
	Synonym	:	ALDC

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 24)

No.	Name	Count	Type	Full Name
1	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:173 , HIS A:175 , HIS A:186 , HOH A:802 , HOH A:857 , HOH A:888	BINDING SITE FOR RESIDUE ZN A 801
2	AC2	SOFTWARE	GLU B:45 , HIS B:173 , HIS B:175 , HIS B:186 , HOH B:815 , HOH B:842 , HOH B:864	BINDING SITE FOR RESIDUE ZN B 802
3	AC3	SOFTWARE	HIS C:173 , HIS C:175 , HIS C:186 , HOH C:831 , HOH C:959 , HOH C:960	BINDING SITE FOR RESIDUE ZN C 803
4	AC4	SOFTWARE	HIS D:173 , HIS D:175 , HIS D:186 , HOH D:820 , HOH D:1024 , HOH D:1025	BINDING SITE FOR RESIDUE ZN D 804

(no "SS Bond" information available for 1XV2)

Asymmetric Unit

No.	Residues
1	Pro A:131	-	Pro A:132
2	Pro B:131	-	Pro B:132
3	Pro C:131	-	Pro C:132
4	Pro D:131	-	Pro D:132

(no "SAP(SNP)/Variant" information available for 1XV2)

(no "PROSITE Motif" information available for 1XV2)

(no "Exon" information available for 1XV2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:232
 aligned with A0A0H3JS15_S | A0A0H3JS15 from UniProtKB/TrEMBL  Length:234

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
         A0A0H3JS15_S     3 NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
               SCOP domains d1xv2a_ A: Hypothetical protein SA2394                                                                                                                                                                                                   SCOP domains
               CATH domains 1xv2A01 A:3-79,A:202-234                                                     1xv2A02 A:80-201 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                             1xv2A01 A:3-79,A:202-234          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhh......eehhhhhh...eeeeeehhheeeeeee..eeeee.....eee.....ee..eeee.....eeeeeeeeehhhhhhhhhhhh......eeeeeeeeeeeeeee...........hhhhhh...eeeeeeeeeeeeeeeehhhhh.....eeeeeeee.....eeeeeeeeeeeeeeeeee..eeeee....hhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xv2 A   3 NVLYQHGTLGTLmAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEmLSENLFSAVKIYGTFKHmHVRmmPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
                                    12  |     22        32        42        52        62        72        82        92       102|      112       122  ||   132       142       152       162       172       182       192       202       212       222       232  
                                       15-MSE                                                                                 103-MSE           121-MSE|                                                                                                            
                                                                                                                                                    125-MSE                                                                                                         
                                                                                                                                                     126-MSE

Chain B from PDB  Type:PROTEIN  Length:232
 aligned with A0A0H3JS15_S | A0A0H3JS15 from UniProtKB/TrEMBL  Length:234

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
         A0A0H3JS15_S     3 NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
               SCOP domains d1xv2b_ B: Hypothetical protein SA2394                                                                                                                                                                                                   SCOP domains
               CATH domains 1xv2B01 B:3-79,B:202-234                                                     1xv2B02 B:80-201 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                             1xv2B01 B:3-79,B:202-234          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhh.....eehhhhhh....eeeeehhheeeeeee..eeeee.....eee.....ee..eee......eeeeeeeeehhhhhhhhhhhh......eeeeeeeeeeeeeee...........hhhhhh...eeeeeeeeeeeeeeeehhhhh.....eeeeeeee.....eeeeeeeeeeeeeeeeee..eeeee....hhhhhhh.....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xv2 B   3 NVLYQHGTLGTLmAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEmLSENLFSAVKIYGTFKHmHVRmmPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
                                    12  |     22        32        42        52        62        72        82        92       102|      112       122  ||   132       142       152       162       172       182       192       202       212       222       232  
                                       15-MSE                                                                                 103-MSE           121-MSE|                                                                                                            
                                                                                                                                                    125-MSE                                                                                                         
                                                                                                                                                     126-MSE

Chain C from PDB  Type:PROTEIN  Length:233
 aligned with A0A0H3JS15_S | A0A0H3JS15 from UniProtKB/TrEMBL  Length:234

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         A0A0H3JS15_S     2 TNVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
               SCOP domains d1xv2c_ C: Hypothetical protein SA2394                                                                                                                                                                                                    SCOP domains
               CATH domains 1xv2C01 C:2-79,C:202-234                                                      1xv2C02 C:80-201 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                             1xv2C01 C:2-79,C:202-234          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhh......eehhhhhh....eeeeehhheeeeeee..eeeee.....eee.....ee.eeee......eeeeeeeeehhhhhhhhhhhh......eeeeeeeeeeeeeee...........hhhhhh...eeeeeeeeeeeeeeeehhhhh.....eeeeeeee.....eeeeeeeeeeeeeeeeee..eeeee....hhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xv2 C   2 TNVLYQHGTLGTLmAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEmLSENLFSAVKIYGTFKHmHVRmmPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
                                    11   |    21        31        41        51        61        71        81        91       101 |     111       121   ||  131       141       151       161       171       181       191       201       211       221       231   
                                        15-MSE                                                                                 103-MSE           121-MSE|                                                                                                            
                                                                                                                                                     125-MSE                                                                                                         
                                                                                                                                                      126-MSE

Chain D from PDB  Type:PROTEIN  Length:232
 aligned with A0A0H3JS15_S | A0A0H3JS15 from UniProtKB/TrEMBL  Length:234

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
         A0A0H3JS15_S     3 NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
               SCOP domains d1xv2d_ D: Hypothetical protein SA2394                                                                                                                                                                                                   SCOP domains
               CATH domains 1xv2D01 D:3-78,D:202-234                                                    1xv2D02 D:79-201 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                              1xv2D01 D:3-78,D:202-234          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhh......eehhhhhh....eeeeehhheeeeeee..eeeee.....eee.....ee..eeee.....eeeeeeeeehhhhhhhhhhhh......eeeeeeeeeeeeeee...........hhhhhhh..eeeeeeeeeeeeeeeehhhhh.....eeeeeeee.....eeeeeeeeeeeeeeeeee..eeeee....hhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xv2 D   3 NVLYQHGTLGTLmAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEmLSENLFSAVKIYGTFKHmHVRmmPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 234
                                    12  |     22        32        42        52        62        72        82        92       102|      112       122  ||   132       142       152       162       172       182       192       202       212       222       232  
                                       15-MSE                                                                                 103-MSE           121-MSE|                                                                                                            
                                                                                                                                                    125-MSE                                                                                                         
                                                                                                                                                     126-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: AF0104/ALDC/Ptd012-like (10)

Superfamily: AF0104/ALDC/Ptd012-like (10)

Family: Alpha-acetolactate decarboxylase-like (1)

Protein domain: Hypothetical protein SA2394 (1)

Staphylococcus aureus [TaxId: 1280] (1)

1a	d1xv2a_	A:
1b	d1xv2b_	B:
1c	d1xv2c_	C:
1d	d1xv2d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: 60s Ribosomal Protein L30; Chain: A; (235)

Homologous Superfamily: Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 (6)

Aureus (Staphylococcus aureus subsp) (1)

1a	1xv2D02	D:79-201
1b	1xv2A02	A:80-201
1c	1xv2B02	B:80-201
1d	1xv2C02	C:80-201
1e	1xv2C01	C:2-79,C:202-234
1f	1xv2A01	A:3-79,A:202-234
1g	1xv2B01	B:3-79,B:202-234
1h	1xv2D01	D:3-78,D:202-234

(no "Pfam Domain" information available for 1XV2)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1XV2)

Asymmetric Unit
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		Pro D:131 - Pro D:132	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (2, 24)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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