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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN MM0500 FROM METHANOSARCINA MAZEI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MAR10.
 
Authors :  F. Forouhar, M. Abashidze, M. Ciano, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  26 Oct 04  (Deposition) - 23 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B  (2x)
Keywords :  Alpha-Beta Protein, Northeast Structural Genomics Consortium, Nesg, Structural Genomics, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, M. Abashidze, M. Ciano, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein From Methanosarcina Mazei, Northeast Strcutural Genomics Target Mar10
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MM0500
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector: PET21
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOSARCINA MAZEI GO1
    Organism Taxid: 192952
    Strain: GOE1
    Synonym: AHA1 DOMAIN, MAR10

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A C
Biological Unit 2 (2x):  B 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1XUV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XUV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:94 -Pro A:95
2Glu B:94 -Pro B:95
3Glu C:94 -Pro C:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XUV)

(-) Exons   (0, 0)

(no "Exon" information available for 1XUV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q8PZJ2_METMA | Q8PZJ2 from UniProtKB/TrEMBL  Length:170

    Alignment length:163
                                                                                                                                                                                         170   
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   
         Q8PZJ2_METMA    11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLEKMKK---   -
               SCOP domains d1xuva_ A: Hypothetical protein MM0500                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee..hhhhhhhhhhhhhhhh........eeeeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeee.........eeeeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xuv A  11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGmLQSGmEEGINDSYERLDELLEKmKKLEH 173
                                    20        30        40        50        60        70        80        90       100       110       120       130       140    |  150       160       170   
                                                                                                                                                                145-MSE|               168-MSE 
                                                                                                                                                                     150-MSE                   


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q8PZJ2_METMA | Q8PZJ2 from UniProtKB/TrEMBL  Length:170

    Alignment length:163
                                                                                                                                                                                         170   
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   
         Q8PZJ2_METMA    11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLEKMKK---   -
               SCOP domains d1xuvb_ B: Hypothetical protein MM0500                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee..hhhhhhhhhhhhhhhh........eeeeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeee.........eeeeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xuv B  11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGmLQSGmEEGINDSYERLDELLEKmKKLEH 173
                                    20        30        40        50        60        70        80        90       100       110       120       130       140    |  150       160       170   
                                                                                                                                                                145-MSE|               168-MSE 
                                                                                                                                                                     150-MSE                   


Chain C from PDB  Type:PROTEIN  Length:163
 aligned with Q8PZJ2_METMA | Q8PZJ2 from UniProtKB/TrEMBL  Length:170

    Alignment length:163
                                                                                                                                                                                         170   
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   
         Q8PZJ2_METMA    11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLEKMKK---   -
               SCOP domains d1xuvc_ C: Hypothetical protein MM0500                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------AHSA1-1xuvC01 C:31-166                                                                                                                  ------- Pfam domains (1)
           Pfam domains (2) --------------------AHSA1-1xuvC02 C:31-166                                                                                                                  ------- Pfam domains (2)
           Pfam domains (3) --------------------AHSA1-1xuvC03 C:31-166                                                                                                                  ------- Pfam domains (3)
         Sec.struct. author ..eeee......eeeeeeee..hhhhhhhhhhhhhhhh........eeeeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeee.........eeeeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xuv C  11 NPTRITAEPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGmLQSGmEEGINDSYERLDELLEKmKKLEH 173
                                    20        30        40        50        60        70        80        90       100       110       120       130       140    |  150       160       170   
                                                                                                                                                                145-MSE|               168-MSE 
                                                                                                                                                                     150-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XUV)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8PZJ2_METMA | Q8PZJ2)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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