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(-) Description

Title :  CYCLOPHILIN FROM TRYPANOSOMA CRUZI BOUND TO CYCLOSPORIN A
 
Authors :  J. M. Caruthers, W. G. J. Hol, Structural Genomics Of Pathogenic Pr Consortium (Sgpp)
Date :  11 Oct 04  (Deposition) - 21 Dec 04  (Release) - 27 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C,F  (1x)
Keywords :  Isomerase-Immunosuppressant Complex, Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosuppressant, Cyclophilin, Structural Genomics, Protein Structure Initiative, Psi, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Caruthers, W. G. J. Hol, Consortium Structural Genomics Of Pathogenic Protozoa (Sgpp
Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Chains: A, B, C
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BG1861
    Expression System Strain: BL21 STAR
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 5693
    Synonym: PPIASE, ROTAMASE, CYCLOPHILIN A
 
Molecule 2 - CYCLOSPORIN A
    Chains: D, E, F
    Engineered: YES
    Organism Scientific: TOLYPOCLADIUM INFLATUM 2
    Organism Taxid: 29910
    Synonym: CYCLOSPORINE, CICLOSPORIN, CICLOSPORINE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  B  E 
Biological Unit 3 (1x):   C  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 27)

Asymmetric Unit (6, 27)
No.NameCountTypeFull Name
1ABA3Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT3Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL3Mod. Amino AcidD-ALANINE
4MLE12Mod. Amino AcidN-METHYLLEUCINE
5MVA3Mod. Amino AcidN-METHYLVALINE
6SAR3Mod. Amino AcidSARCOSINE
Biological Unit 1 (6, 9)
No.NameCountTypeFull Name
1ABA1Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT1Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL1Mod. Amino AcidD-ALANINE
4MLE4Mod. Amino AcidN-METHYLLEUCINE
5MVA1Mod. Amino AcidN-METHYLVALINE
6SAR1Mod. Amino AcidSARCOSINE
Biological Unit 2 (6, 9)
No.NameCountTypeFull Name
1ABA1Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT1Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL1Mod. Amino AcidD-ALANINE
4MLE4Mod. Amino AcidN-METHYLLEUCINE
5MVA1Mod. Amino AcidN-METHYLVALINE
6SAR1Mod. Amino AcidSARCOSINE
Biological Unit 3 (6, 9)
No.NameCountTypeFull Name
1ABA1Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT1Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL1Mod. Amino AcidD-ALANINE
4MLE4Mod. Amino AcidN-METHYLLEUCINE
5MVA1Mod. Amino AcidN-METHYLVALINE
6SAR1Mod. Amino AcidSARCOSINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:57 , PHE A:62 , GLN A:65 , GLY A:74 , ALA A:102 , ASN A:103 , ALA A:104 , GLN A:112 , PHE A:114 , TRP A:122 , HIS A:127 , ALA C:104BINDING SITE FOR CHAIN D OF CYCLOSPORIN A
2AC2SOFTWAREHOH A:2064 , HOH A:2066 , ARG B:57 , PHE B:62 , GLN B:65 , GLY B:74 , ALA B:102 , ASN B:103 , GLN B:112 , PHE B:114 , TRP B:122 , LEU B:123 , HIS B:127 , HOH B:2047 , HOH B:2049 , HOH E:2001 , HOH E:2002BINDING SITE FOR CHAIN E OF CYCLOSPORIN A
3AC3SOFTWARETRP A:122 , ALA B:104 , ARG C:57 , PHE C:62 , GLN C:65 , GLY C:74 , ALA C:102 , ASN C:103 , GLN C:112 , PHE C:114 , TRP C:122 , HIS C:127 , HOH F:2001 , HOH F:2002 , HOH F:2003 , HOH F:2004 , HOH F:2005 , HOH F:2006BINDING SITE FOR CHAIN F OF CYCLOSPORIN A

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XQ7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Bmt D:5 -Aba D:6

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XQ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XQ7)

(-) Exons   (0, 0)

(no "Exon" information available for 1XQ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:166
 aligned with Q4DPB9_TRYCC | Q4DPB9 from UniProtKB/TrEMBL  Length:194

    Alignment length:166
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188      
         Q4DPB9_TRYCC    29 DPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 194
               SCOP domains d1xq7a_ A: Cyclophilin (eukaryotic)                                                                                                                                    SCOP domains
               CATH domains 1xq7A00 A:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh..........eeeee...eeee...............................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh...hhhhh....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xq7 A   1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain B from PDB  Type:PROTEIN  Length:166
 aligned with Q4DPB9_TRYCC | Q4DPB9 from UniProtKB/TrEMBL  Length:194

    Alignment length:166
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188      
         Q4DPB9_TRYCC    29 DPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 194
               SCOP domains d1xq7b_ B: Cyclophilin (eukaryotic)                                                                                                                                    SCOP domains
               CATH domains 1xq7B00 B:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh..........eeeee...eeee...............................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh...hhhhh....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xq7 B   1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain C from PDB  Type:PROTEIN  Length:166
 aligned with Q4DPB9_TRYCC | Q4DPB9 from UniProtKB/TrEMBL  Length:194

    Alignment length:166
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188      
         Q4DPB9_TRYCC    29 DPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 194
               SCOP domains d1xq7c_ C: Cyclophilin (eukaryotic)                                                                                                                                    SCOP domains
               CATH domains 1xq7C00 C:1-166 Cyclophilin                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh............eee...eeee...............................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xq7 C   1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain D from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 1xq7 D   1 xxxxxxxxVxA  11
                            ||||||||10 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE
                                    10-MLE


Chain E from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 1xq7 E   1 xxxxxxxxVxA  11
                            ||||||||10 
                            |||||||| | 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE


Chain F from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 1xq7 F   1 xxxxxxxxVxA  11
                            ||||||||10 
                            |||||||| | 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XQ7)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q4DPB9_TRYCC | Q4DPB9)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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  1xq7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4DPB9_TRYCC | Q4DPB9: 1xo7

(-) Related Entries Specified in the PDB File

1bck CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN C
1c5f CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A
1csa SOLUTION STRUCTURE OF E.COLI CYCLOPHILIN (F112W) COMPLEXED WITH CYCLOSPORIN A
1cwa CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
1cwb CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5
1cwc CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwf CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN D
1cwh CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A MODIFIED AT POSITION 7
1cwi CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITION 7
1cwj CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7.
1cwk CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7.
1cwl CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwm CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwo CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH NODIFIED CYCLOSPORIN C AT POSITIONS 1, AND 9
1cya SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WIYH CYCLOSPORIN A
1cyb SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A
1cyn CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN B COMPLEXED WITH MODIFIED CYCLOSPORIN A
1ikf CRYSTAL STRUCTURE OF CTCLOSPORIN-FAB COMPLEX
1m63 CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN-CYCLOSPORIN COMPLEX
1mf8 CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITH HUMAN CYCLOPHILIN AND CYCLOSPORIN A
1mik CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 6
1qng CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A
1qnh CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN (DOUBLE MUTANT) COMPLEXED WITH CYCLOSPORIN A
1xo7 CYCLOPHILIN FROM TRYPANOSOMA CRUZI RELATED ID: TCRU013382AAA RELATED DB: TARGETDB
2esl CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A
2oju CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN J COMPLEXED WITH CYCLOSPORIN A
2poy CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM IOWA II CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
2rma CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
2rmb CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5
2rmc CRYSTAL STRUCTURE OF MURINE CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A
2wfj CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF HUMAN CYCLOPHILIN G COMPLEXED WITH CYCLOSPORIN A
2x2c CRYSTAL STRUCTURE OF HUMAN ACETYL-CYPA COMPLEXED WITH CYCLOSPORINE A
2x7k CRYSTAL STRUCTURE OF PPIL1 COMPLEXED WITH CYCLOSPORINE A
2z6w CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN D IN COMPLEX WITH CYCLOSPORIN A
3bo7 CRYSTAL STRUCTURE OF CYCLOSPHILIN A FROM TOXOPLASMA GONDII COMPLEXED WIT CYCLOSPORIN A
3cys SOLUTION STRUCTURE OF THE HUMAN CYCLOSPORIN A COMPLEXED WITH CYCLOSPORIN A
3eov CRYSTAL STRUCTURE OF CYCLOPHILIN FROM LEISHMANIA DONOVANI COMPLEXED WITH CYCLOSPORIN A