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(-) Description

Title :  SOLUTION STRUCTURE OF THE CORE DOMAIN OF CALCYCLIN BINDING PROTEIN; SIAH-INTERACTING PROTEIN (SIP)
 
Authors :  X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  16 May 05  (Deposition) - 16 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Cs Domain, Calcyclin-Binding Protein/Siah-Interacting Protein/S100A6-Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Apoptosis, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Core Domain Of Calcyclin Binding Protein; Siah-Interacting Protein (Sip)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALCYCLIN-BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression System PlasmidP040329-62
    Expression System Vector TypePLASMID
    FragmentCS DOMAIN
    GeneCACYBP, S100A6BP, SIP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL FREE PROTEIN SYNTHESIS
    SynonymCACYBP, HCACYBP, SIAH-INTERACTING PROTEIN, S100A6- BINDING PROTEIN, PNAS-107

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X5M)

(-) Sites  (0, 0)

(no "Site" information available for 1X5M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X5M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X5M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X5M)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CSPS51203 CS domain profile.CYBP_HUMAN73-167  1A:18-112
2SGSPS51048 SGS domain profile.CYBP_HUMAN151-228  1A:96-127

(-) Exons   (5, 5)

NMR Structure (5, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003676792aENSE00001273868chr1:174968869-174969331463CYBP_HUMAN1-550--
1.4cENST000003676794cENSE00001796251chr1:174973750-174973969220CYBP_HUMAN6-79741A:1-2424
1.5cENST000003676795cENSE00001624674chr1:174975881-17497597797CYBP_HUMAN79-111331A:24-5633
1.5dENST000003676795dENSE00001598006chr1:174976234-174976333100CYBP_HUMAN111-144341A:56-8934
1.6aENST000003676796aENSE00001743422chr1:174977745-17497784298CYBP_HUMAN145-177331A:90-12132
1.7cENST000003676797cENSE00001848785chr1:174979059-1749808461788CYBP_HUMAN177-228521A:122-1276

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with CYBP_HUMAN | Q9HB71 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:135
                                    65        75        85        95       105       115       125       135       145       155       165       175       185     
           CYBP_HUMAN    56 DNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEG 190
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................ee....eeeee..eeeeeee...........eeeee...eeeeee.......eeeeee...........eeeee..eeeeeee...........hhhhhhhhh.--------...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------CS  PDB: A:18-112 UniProt: 73-167                                                              ----------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------SGS  PDB: A:96-127 UniProt: 151-228      PROSITE (2)
           Transcript 1 (1) Exon 1.4c  PDB: A:1-24  -------------------------------Exon 1.5d  PDB: A:56-89           Exon 1.6a  PDB: A:90-121         ------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.5c  PDB: A:24-56          -----------------------------------------------------------------Exon 1.7c      Transcript 1 (2)
                 1x5m A   1 GSSGSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEK--------SGPSSG 127
                                    10        20        30        40        50        60        70        80        90       100       110       120|      122     
                                                                                                                                                  121      122     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1X5M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X5M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1X5M)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (CYBP_HUMAN | Q9HB71)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
cellular component
    GO:0030877    beta-catenin destruction complex    A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005641    nuclear envelope lumen    The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYBP_HUMAN | Q9HB712a25 2a26

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