1WZ7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ENHANCER OF RUDIMENTARY HOMOLOGUE (ERH)

Authors :   R. Arai, M. Kukimoto-Niino, H. Uda-Tochio, S. Morita, T. Uchikubo- Kamo, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   26 Feb 05 (Deposition) - 03 May 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Alpha/Beta, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Arai, M. Kukimoto-Niino, H. Uda-Tochio, S. Morita, T. Uchikubo-Kamo, R. Akasaka, Y. Etou, Y. Hayashizaki, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Crystal Structure Of An Enhancer Of Rudimentary Homolog (Erh) At 2. 1 Angstroms Resolution.
Protein Sci. V. 14 1888 2005
PubMed-ID: 15937287 | Reference-DOI: 10.1110/PS.051484505
(for further references see the PDB file header)

Molecule 1 - ENHANCER OF RUDIMENTARY HOMOLOG
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System Plasmid	:	PCR2.1
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	CELL-FREE PROTEIN EXPRESSION SYSTEM
	Synonym	:	ERH

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1WZ7)

(no "SS Bond" information available for 1WZ7)

(no "Cis Peptide Bond" information available for 1WZ7)

(no "SAP(SNP)/Variant" information available for 1WZ7)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ER	PS01290	Enhancer of rudimentary signature.	ERH_MOUSE	52-68	3	A:52-68 B:52-68 C:52-68

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ER	PS01290	Enhancer of rudimentary signature.	ERH_MOUSE	52-68	2	A:52-68 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ER	PS01290	Enhancer of rudimentary signature.	ERH_MOUSE	52-68	2	- B:52-68 C:52-68

(no "Exon" information available for 1WZ7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:102
 aligned with ERH_MOUSE | P84089 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:102
                              1                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98  
            ERH_MOUSE     - --MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
               SCOP domains d1wz7a_ A: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee........eeeee.hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.eeeeeeee....eeeeehhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------ER  PDB: A:52-68 -------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1wz7 A  -2 ATmSHTILLVQPTKRPEGRTYADYESVNECmEGVCKmYEEHLKRmNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
                             ||      8        18        28|     | 38    |   48        58        68        78        88        98  
                             ||                          29-MSE |      43-MSE                                                     
                            -1|                                35-MSE                                                             
                              1-MSE

Chain B from PDB  Type:PROTEIN  Length:98
 aligned with ERH_MOUSE | P84089 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:98
                                    10        20        30        40        50        60        70        80        90        
            ERH_MOUSE     1 MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQ  98
               SCOP domains d1wz7b_ B: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeee.hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.eeeeeee......eeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------ER  PDB: B:52-68 ------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1wz7 B   1 mSHTILLVQPTKRPEGRTYADYESVNECmEGVCKmYEEHLKRmNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQ  98
                            |       10        20        30    |   40  |     50        60        70        80        90        
                            1-MSE                      29-MSE |      43-MSE                                                   
                                                             35-MSE

Chain C from PDB  Type:PROTEIN  Length:95
 aligned with ERH_MOUSE | P84089 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:98
                                    10        20        30        40        50        60        70        80        90        
            ERH_MOUSE     1 MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQ  98
               SCOP domains d1wz7c_ C: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeee.hhhhhhhhhhhhhhhhhhhh..---....hhhhhhhhhh...eeeeeeee....eeeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------ER  PDB: C:52-68 ------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1wz7 C   1 mSHTILLVQPTKRPEGRTYADYESVNECmEGVCKmYEEHLKRmNP---SITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQ  98
                            |       10        20        30    |   40  | |   50        60        70        80        90        
                            1-MSE                      29-MSE |      43-MSE49                                                 
                                                             35-MSE    45

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ERH-like (4)

Superfamily: ERH-like (4)

Family: ERH-like (4)

Protein domain: automated matches (1)

Mouse (Mus musculus) [TaxId: 10090] (1)

1a	d1wz7a_	A:
1b	d1wz7b_	B:
1c	d1wz7c_	C:

(no "CATH Domain" information available for 1WZ7)

(no "Pfam Domain" information available for 1WZ7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (ERH_MOUSE | P84089)

molecular function
	GO:0008327	methyl-CpG binding	Interacting selectively and non-covalently with a methylated cytosine/guanine dinucleotide.
biological process
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0001649	osteoblast differentiation	The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
	GO:0045747	positive regulation of Notch signaling pathway	Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0034709	methylosome	A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
	GO:0030496	midbody	A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.

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Ligands, Modified Residues, Ions (1, 12)

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