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(-) Description

Title :  NMR STRUCTURE OF OANTR
 
Authors :  J. L. Dutton, R. F. Renda, C. Waine, R. J. Clark, N. L. Daly, C. V. Jennings, M. A. Anderson, D. J. Craik
Date :  28 Jul 04  (Deposition) - 14 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Helix, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Dutton, R. F. Renda, C. Waine, R. J. Clark, N. L. Daly, C. V. Jennings, M. A. Anderson, D. J. Craik
Conserved Structural And Sequence Elements Implicated In The Processing Of Gene-Encoded Circular Proteins
J. Biol. Chem. V. 279 46858 2004
PubMed-ID: 15328347  |  Reference-DOI: 10.1074/JBC.M407421200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - KALATA B3/B6
    Chains: A
    Engineered: YES
    Fragment: N-TERMINAL REPEAT
    Other Details: SYN PEPTIDE BASED ON N-TERMINAL REPEAT SEQUENCE OF CYCLOTIDE PRECURSORS FROM THE PLANT OLDENLANDIA AFFINIS
    Synonym: OANTR PROTEIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WN8)

(-) Sites  (0, 0)

(no "Site" information available for 1WN8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WN8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WN8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WN8)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYCLOTIDEPS51052 Cyclotides profile.KAB3_OLDAF67-96
122-151		  1-
A:20-22

(-) Exons   (0, 0)

(no "Exon" information available for 1WN8)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:22
 aligned with KAB3_OLDAF | P58455 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:22
                                   112       122  
           KAB3_OLDAF   103 GVKSSETTLTMFLKEMQLKGLP 124
               SCOP domains d1wn8a_ A:             SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE -------------------CYC PROSITE
                 Transcript ---------------------- Transcript
                 1wn8 A   1 GVKSSETTLTMFLKEMQLKGLP  22
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WN8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WN8)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (KAB3_OLDAF | P58455)
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1wn4 A SYNTHETIC PEPTIDE BASED ON THE N-TERMINAL REPEAT SEQ FROM CYCLOTIDE PRECURSORS