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(-) Description

Title :  SOLUTION STRUCTURE OF CUE DOMAIN IN THE C-TERMINAL OF HUMAN TOLL-INTERACTING PROTEIN (TOLLIP)
 
Authors :  C. Zhao, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  28 May 04  (Deposition) - 28 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Cue Domain, Toll-Interacting Protein (Tollip), Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Zhao, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of Cue Domain In The C-Terminal Of Human Toll-Interacting Protein (Tollip)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TOLL-INTERACTING PROTEIN
    ChainsA
    EngineeredYES
    Expression System PlasmidP040301-83
    Expression System Vector TypePLASMID
    FragmentCUE DOMAIN
    GeneIMS CDNA PNC02024
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WGL)

(-) Sites  (0, 0)

(no "Site" information available for 1WGL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WGL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WGL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WGL)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CUEPS51140 CUE domain profile.TOLIP_HUMAN229-272  1A:8-51

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1dENST000003172041dENSE00001557938chr11:1330852-1330696157TOLIP_HUMAN1-11110--
1.5bENST000003172045bENSE00001365143chr11:1317024-1316875150TOLIP_HUMAN12-61500--
1.8aENST000003172048aENSE00000690371chr11:1311639-1311457183TOLIP_HUMAN62-122610--
1.9bENST000003172049bENSE00001319112chr11:1310006-1309854153TOLIP_HUMAN123-173510--
1.10ENST0000031720410ENSE00000690373chr11:1307322-130723291TOLIP_HUMAN174-204311A:1-4 (gaps)9
1.12hENST0000031720412hENSE00001339630chr11:1298483-12956012883TOLIP_HUMAN204-274711A:4-53 (gaps)71

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:59
 aligned with TOLIP_HUMAN | Q9H0E2 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:85
                                                                                                        274      
                                   205       215       225       235       245       255       265        |-     
          TOLIP_HUMAN   196 GVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP------   -
               SCOP domains d1     wg     la_                 A: Toll-interacting protein                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------CUE-1wglA01 A:9-50                        --------- Pfam domains
         Sec.struct. author ..-----..-----...----------------..hhhhhhhhhh.....hhhhhhhhhh....hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------CUE  PDB: A:8-51 UniProt: 229-272           -------- PROSITE
           Transcript 1 (1) Exon 1.10---------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------Exon 1.12h  PDB: A:4-53 (gaps) UniProt: 204-274                        ------ Transcript 1 (2)
                 1wgl A   1 GS-----SG-----SSG----------------CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG  59
                             |     ||-    | |  -         -   |    14        24        34        44        54     
                             2     3|     5 7                8                                                   
                                    4                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WGL)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: UBA (32)

(-) Gene Ontology  (27, 27)

NMR Structure(hide GO term definitions)
Chain A   (TOLIP_HUMAN | Q9H0E2)
molecular function
    GO:0032183    SUMO binding    Interacting selectively and non-covalently with the small ubiquitin-like protein SUMO.
    GO:0035325    Toll-like receptor binding    Interacting selectively and non-covalently with a Toll-like protein, a pattern recognition receptor that binds pattern motifs from a variety of microbial sources to initiate an innate immune response.
    GO:0005150    interleukin-1, Type I receptor binding    Interacting selectively and non-covalently with a Type I interleukin-1 receptor.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0031624    ubiquitin conjugating enzyme binding    Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0006914    autophagy    The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0045321    leukocyte activation    A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0033235    positive regulation of protein sumoylation    Any process that activates or increases the frequency, rate or extent of the addition of SUMO groups to a protein.
    GO:0036010    protein localization to endosome    A process in which a protein is transported to, or maintained in, a location within an endosome.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0045323    interleukin-1 receptor complex    A protein complex that binds interleukin-1; comprises an alpha and a beta subunit.
    GO:0045092    interleukin-18 receptor complex    A protein complex that binds interleukin-18; comprises an alpha and a beta subunit.
    GO:0016604    nuclear body    Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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 Related Entries

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        TOLIP_HUMAN | Q9H0E22n31

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