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(-) Description

Title :  SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM ARABIOPSIS THALIANA F5O11.17 PROTEIN
 
Authors :  T. Tomizawa, T. Kigawa, N. Nemoto, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 May 04  (Deposition) - 26 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-An1 Domain, Zinc Binding, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, N. Nemoto, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Zf-An1 Domain From Arabiopsis Thaliana F5O11. 17 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER (AN1-LIKE) FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030421-13
    Expression System Vector Type: PLASMID
    Fragment: ZF-AN1 DOMAIN
    Gene: RIKEN CDNA RAFL04-16-M15
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: F5O11.17 PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:28 , CYS A:31 , CYS A:49 , HIS A:52BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:42 , CYS A:44 , HIS A:58 , CYS A:60BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WFP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WFP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WFP)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_AN1PS51039 Zinc finger AN1-type profile.SAP1_ARATH106-149  1A:25-68

(-) Exons   (0, 0)

(no "Exon" information available for 1WFP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:74
 aligned with SAP1_ARATH | Q6NNI8 from UniProtKB/Swiss-Prot  Length:168

    Alignment length:75
                                    90       100       110       120       130       140       150     
           SAP1_ARATH    81 GSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAK 155
               SCOP domains d1 wfpa_ A: Zinc finger A20 and AN1 domains containing protein At1g12440    SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------zf-AN1-1wfpA01 A:28-68                   ------ Pfam domains
         Sec.struct. author ..-.....................................ee.....ee.......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------ZF_AN1  PDB: A:25-68 UniProt: 106-149       ------ PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 1wfp A   1 GS-SGSSGTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPSSG  74
                             | |     9        19        29        39        49        59        69     
                             2 3
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WFP)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-AN1] (8)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (SAP1_ARATH | Q6NNI8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

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