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(-) Description

Title :  SOLUTION STRUCTRUE OF THE ZF-AN1 DOMAIN FROM ARABIDOPSIS THALIANA AT2G36320 PROTEIN
 
Authors :  T. Tomizawa, T. Kigawa, N. Nemoto, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 May 04  (Deposition) - 26 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-An1 Domain, Zinc Binding, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, N. Nemoto, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structrue Of The Zf-An1 Domain From Arabidopsis Thaliana At2G36320 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER (AN1-LIKE) FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030408-96
    Expression System Vector Type: PLASMID
    Fragment: ZF-AN1 DOMAIN
    Gene: RIKEN CDNA RAFL09-30-H08
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: AT2G36320 PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , CYS A:39 , HIS A:42BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:32 , CYS A:34 , HIS A:48 , CYS A:50BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WFH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WFH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WFH)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_AN1PS51039 Zinc finger AN1-type profile.SAP4_ARATH99-142  1A:15-58

(-) Exons   (0, 0)

(no "Exon" information available for 1WFH)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:64
 aligned with SAP4_ARATH | Q9SJM6 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:134
                                    33        43        53        63        73        83        93       103       113       123       133       143       153    
           SAP4_ARATH    24 GSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELEIPTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAK 157
               SCOP domains d1wfha       _                                                       A:                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------zf-AN1-1wfhA01 A:18-58                   --------------- Pfam domains
         Sec.struct. author ......-------.------------------------------------------------------......................ee.....ee....................------...---... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------ZF_AN1  PDB: A:15-58 UniProt: 99-142        --------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wfh A   1 GSSGSS-------G------------------------------------------------------QPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAG------SGP---SSG  64
                                 |   -   |     -         -         -         -         -        |9        19        29        39        49        |-     | | - |  
                                 6       7                                                      8                                                58     59 |  62  
                                                                                                                                                          61
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WFH)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-AN1] (8)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (SAP4_ARATH | Q9SJM6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

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