1VR8 - JenaLib

Title :   CRYSTAL STRUCTURE OF GTP BINDING REGULATOR (TM1622) FROM THERMOTOGA MARITIMA AT 1.75 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   16 Feb 05 (Deposition) - 15 Mar 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A

Keywords :   Tm1622, Gtp Binding Regulator, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Xu, S. S. Krishna, D. Mcmullan, R. Schwarzenbacher, M. D. Miller, P. Abdubek, S. Agarwalla, E. Ambing, T. Astakhova, H. L. Axelrod, J. M. Canaves, D. Carlton, H. J. Chiu, T. Clayton, M. Didonato, L. Duan, M. A. Elsliger, J. Feuerhelm, S. K. Grzechnik, J. Hale, E. Hampton, G. W. Han, J. Haugen, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, E. Koesema, A. Kreusch, P. Kuhn, A. T. Morse, E. Nigoghossian, L. Okach S. Oommachen, J. Paulsen, K. Quijano, R. Reyes, C. L. Rife, G. Spraggon R. C. Stevens, H. Van Den Bedem, A. White, G. Wolf, K. O. Hodgson, J. Wooley, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Crystal Structure Of An Orfan Protein (Tm1622) From Thermotoga Maritima At 1. 75 A Resolution Reveals A Fold Similar To The Ran-Binding Protein Mog1P.
Proteins V. 65 777 2006
PubMed-ID: 16948158 | Reference-DOI: 10.1002/PROT.21015

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:101 , LEU A:103 , LYS A:110 , SER A:112	BINDING SITE FOR RESIDUE AZI A 1
2	AC2	SOFTWARE	ILE A:-6 , LYS A:-7 , LYS A:126 , HOH A:164 , HOH A:262	BINDING SITE FOR RESIDUE AZI A 2
3	AC3	SOFTWARE	HIS A:144 , ARG A:147 , HOH A:192 , HOH A:193 , HOH A:270	BINDING SITE FOR RESIDUE GOL A 3
4	AC4	SOFTWARE	GLU A:50 , LYS A:110 , GLU A:139 , VAL A:142 , HOH A:195 , HOH A:295	BINDING SITE FOR RESIDUE GOL A 4
5	AC5	SOFTWARE	GLY A:55 , TYR A:76 , GLU A:133 , HOH A:213	BINDING SITE FOR RESIDUE GOL A 5

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:135
 aligned with Q9X1V7_THEMA | Q9X1V7 from UniProtKB/TrEMBL  Length:154

    Alignment length:142
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152  
         Q9X1V7_THEMA    13 MLSSCTLIKIVVPPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRAGFVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ 154
               SCOP domains --------    d1vr8a1 A:25-154 Hypothetical protein TM1622                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------    -DUF3242-1vr8A01 A:26-153                                                                                                        - Pfam domains
         Sec.struct. author ........----.....hhhhhhhh......eeeeeeeeeee..eeeeeeeeeeee..eeeeeeeee..hhhhhhhhhhh.---...eeeee...eeeeeeee..eeeeeeee..eeeeeee..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vr8 A  -7 KIHHHHHH----PPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEmKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGR---VSIRSVLDLPNmGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEmKQ 154
                                   | -  |     32        42        52      | 62        72        82        92|   |  102     | 112       122       132       142       152  
                                   0   25                                59-MSE                            93  97        108-MSE                                     152-MSE

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (0, 0)

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