1VR5 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE-BINDING (TM1223) FROM THERMOTOGA MARITIMA AT 1.73 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   11 Feb 05 (Deposition) - 08 Mar 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.73

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Tm1223, Oligopeptide Abc Transporter, Periplasmic Oligopeptide- Binding, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding (Tm1223) From Thermotoga Maritima At 1. 73 A Resolution
To Be Published
PubMed: search

Molecule 1 - OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE- BINDING PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM1223
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	243274
	Strain	:	MSB8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 59)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	EDO	30	Ligand/Ion	1,2-ETHANEDIOL
4	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5	FMT	2	Ligand/Ion	FORMIC ACID
6	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
7	NA	2	Ligand/Ion	SODIUM ION

Biological Unit 1 (5, 31)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	16	Ligand/Ion	1,2-ETHANEDIOL
4	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5	FMT	2	Ligand/Ion	FORMIC ACID
6	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
7	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (3, 24)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
4	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5	FMT	-1	Ligand/Ion	FORMIC ACID
6	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
7	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (38, 38)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:362 , ASP A:366 , PHE A:368 , GLU A:370	BINDING SITE FOR RESIDUE NA A 1
02	AC2	SOFTWARE	ASP B:362 , ASN B:364 , ASP B:366 , PHE B:368 , GLU B:370	BINDING SITE FOR RESIDUE NA B 2
03	AC3	SOFTWARE	ASN A:128 , ARG A:149 , HOH A:1149	BINDING SITE FOR RESIDUE CL A 3
04	AC4	SOFTWARE	ASN B:128 , ARG B:149 , HOH B:1023	BINDING SITE FOR RESIDUE CL B 4
05	AC5	SOFTWARE	VAL A:263 , GLU A:520 , ASN A:525 , TRP A:526 , HOH A:847	BINDING SITE FOR RESIDUE ACT A 6
06	AC6	SOFTWARE	LYS A:257 , VAL A:263 , THR A:264 , GLU A:267	BINDING SITE FOR RESIDUE ACT A 7
07	AC7	SOFTWARE	PRO B:46 , TRP B:47 , ALA B:49 , ALA B:51 , HOH B:675	BINDING SITE FOR RESIDUE ACT B 8
08	AC8	SOFTWARE	PRO A:46 , TRP A:47 , ALA A:49 , ALA A:51 , HOH A:579 , HOH A:606	BINDING SITE FOR RESIDUE ACT A 9
09	AC9	SOFTWARE	TYR A:385 , LYS A:411 , TYR A:412 , PRO A:413 , ASP A:414	BINDING SITE FOR RESIDUE EPE A 5
10	BC1	SOFTWARE	GLY B:437 , VAL B:438 , GLY B:541 , TRP B:542 , EDO B:562 , HOH B:788	BINDING SITE FOR RESIDUE EDO B 10
11	BC2	SOFTWARE	ILE B:167 , LYS B:171 , ASN B:181 , HOH B:619 , HOH B:791	BINDING SITE FOR RESIDUE EDO B 11
12	BC3	SOFTWARE	EDO A:19 , TRP A:81 , SER A:83 , ASN A:84 , TYR A:150 , ASN A:484 , HOH A:904 , HOH A:1120	BINDING SITE FOR RESIDUE EDO A 12
13	BC4	SOFTWARE	EDO A:14 , GLY A:437 , VAL A:438 , TRP A:542 , HOH A:790	BINDING SITE FOR RESIDUE EDO A 13
14	BC5	SOFTWARE	EDO A:13 , GLN A:155 , THR A:435 , HOH A:629 , HOH A:701	BINDING SITE FOR RESIDUE EDO A 14
15	BC6	SOFTWARE	GLN A:98 , ASP A:99 , GLY A:100 , GLU A:182 , ASN A:207 , HOH A:617 , HOH A:620 , HOH A:923	BINDING SITE FOR RESIDUE EDO A 15
16	BC7	SOFTWARE	PHE A:62 , GLY A:79 , TYR A:87 , LEU A:157 , HOH A:650 , HOH A:818 , HOH A:1022	BINDING SITE FOR RESIDUE EDO A 16
17	BC8	SOFTWARE	PRO B:125 , TRP B:129 , GLU B:152 , HOH B:985 , HOH B:1023	BINDING SITE FOR RESIDUE EDO B 17
18	BC9	SOFTWARE	GLU B:520 , THR B:524 , ASN B:525 , TRP B:526 , HOH B:747	BINDING SITE FOR RESIDUE EDO B 18
19	CC1	SOFTWARE	EDO A:12 , ASN A:484 , ASP A:485	BINDING SITE FOR RESIDUE EDO A 19
20	CC2	SOFTWARE	PHE B:62 , GLY B:79 , TYR B:87 , LEU B:157 , HOH B:673 , HOH B:988 , HOH B:1011	BINDING SITE FOR RESIDUE EDO B 20
21	CC3	SOFTWARE	TRP B:81 , SER B:83 , TYR B:150 , ASN B:484	BINDING SITE FOR RESIDUE EDO B 21
22	CC4	SOFTWARE	TYR B:461	BINDING SITE FOR RESIDUE EDO B 22
23	CC5	SOFTWARE	PHE A:110 , HOH A:649	BINDING SITE FOR RESIDUE EDO A 558
24	CC6	SOFTWARE	PRO B:254 , VAL B:255 , LYS B:258 , HOH B:701	BINDING SITE FOR RESIDUE EDO B 559
25	CC7	SOFTWARE	PHE B:110 , GLU B:113 , ILE B:114 , HOH B:643	BINDING SITE FOR RESIDUE EDO B 560
26	CC8	SOFTWARE	ASN B:525 , ASN B:531 , TYR B:533	BINDING SITE FOR RESIDUE EDO B 561
27	CC9	SOFTWARE	VAL A:338 , TYR A:342 , GLU A:498	BINDING SITE FOR RESIDUE EDO A 559
28	DC1	SOFTWARE	EDO B:10 , PHE B:434 , THR B:435 , THR B:436 , GLY B:437 , HOH B:1005	BINDING SITE FOR RESIDUE EDO B 562
29	DC2	SOFTWARE	ARG A:24 , TYR A:29 , GLU A:242 , HOH A:1042 , HOH A:1044 , HOH A:1054	BINDING SITE FOR RESIDUE EDO A 560
30	DC3	SOFTWARE	GLU B:193 , SER B:194 , TRP B:195 , HOH B:932	BINDING SITE FOR RESIDUE EDO B 563
31	DC4	SOFTWARE	TRP A:35 , VAL A:228 , LEU A:229 , SER A:230 , ASN A:231 , PHE A:248	BINDING SITE FOR RESIDUE EDO A 562
32	DC5	SOFTWARE	PRO A:125 , VAL A:126 , TRP A:129 , GLU A:152 , MSE A:156 , HOH A:1149 , HOH A:1150	BINDING SITE FOR RESIDUE EDO A 564
33	DC6	SOFTWARE	THR A:388 , MSE A:391 , GLN A:395 , HOH A:954	BINDING SITE FOR RESIDUE EDO A 565
34	DC7	SOFTWARE	GLU A:472 , LYS A:495 , ILE A:499	BINDING SITE FOR RESIDUE EDO A 566
35	DC8	SOFTWARE	SER A:194 , TRP A:195 , HOH A:813 , HOH A:1052	BINDING SITE FOR RESIDUE EDO A 567
36	DC9	SOFTWARE	VAL B:228 , SER B:230 , ASN B:231 , PHE B:248	BINDING SITE FOR RESIDUE EDO B 564
37	EC1	SOFTWARE	SER A:290 , PRO A:292 , ARG A:295 , HOH A:922	BINDING SITE FOR RESIDUE FMT A 568
38	EC2	SOFTWARE	ASP A:503	BINDING SITE FOR RESIDUE FMT A 569

(no "SS Bond" information available for 1VR5)

Asymmetric Unit

No.	Residues
1	Ala A:269	-	Pro A:270
2	Tyr A:287	-	Pro A:288
3	Ala B:269	-	Pro B:270
4	Tyr B:287	-	Pro B:288

(no "SAP(SNP)/Variant" information available for 1VR5)

(no "PROSITE Motif" information available for 1VR5)

(no "Exon" information available for 1VR5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:536
 aligned with Q9X0V0_THEMA | Q9X0V0 from UniProtKB/TrEMBL  Length:557

    Alignment length:536
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
         Q9X0V0_THEMA    22 FERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINTPIVPKHIWENKTEEEVLQAANENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNNVAVGMLMKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYMLPANTAGIYINVNKYPLSIPEFRRAMAYAINPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKEVVDKYGFKYDPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK 557
               SCOP domains -d1vr5a1 A:23-557 Oligo-peptide binding protein (OPPA)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeee..............................eeee....eeee..eeeeeeee..eeeeee............hhhhhhhhhhhhhhh....hhhhhh.eeeeeeee..eeeeee...hhhhhhhhhhhh...hhhhhh..hhhhhhhh..........eeeeeee..eeeeee...hhhhhhhh......eeeee...hhhhhhhhhhh....ee.....hhhhhhhhh............eeeeeeeeee........hhhhhhhhhhhhhhhhhhhhh.....ee........hhhhhh..hhhhhhhhh...hhhhhhhhhhhh....................eeee....hhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeeee..ee....ee.................hhhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vr5 A   0 HERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQmLINTPIVPKHIWENKTEEEVLQAANENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNNVAVGmLmKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYmLPANTAGIYINVNKYPLSIPEFRRAmAYAINPEKIVTRAYENmVTAANPAGILPLPGYmKYYPKEVVDKYGFKYDPEmAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWmVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK 557
                            ||      31        41        51        61        71        81        91       101       111       121       131       141       151    |  161       171       181       191       201       211       221       231     | 241       251       261       271|      281       291      |301       311   |   321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
                            ||                                                                                                                                  156-MSE                                                                          237-MSE                            272-MSE                   298-MSE          315-MSE         331-MSE            350-MSE                                  391-MSE                                                                                                                                                                  
                            0|                                                                                                                                                                                                                     239-MSE                                                                                                                                                                                                                                                                                                                          
                            23

Chain B from PDB  Type:PROTEIN  Length:536
 aligned with Q9X0V0_THEMA | Q9X0V0 from UniProtKB/TrEMBL  Length:557

    Alignment length:536
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
         Q9X0V0_THEMA    22 FERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINTPIVPKHIWENKTEEEVLQAANENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNNVAVGMLMKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYMLPANTAGIYINVNKYPLSIPEFRRAMAYAINPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKEVVDKYGFKYDPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK 557
               SCOP domains d1vr5b_ B: Oligo-peptide binding protein (OPPA)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------SBP_bac_5-1vr5B01 B:70-454                                                                                                                                                                                                                                                                                                                                                                       ------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------SBP_bac_5-1vr5B02 B:70-454                                                                                                                                                                                                                                                                                                                                                                       ------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhh.eeeee.............hhhhh............eeee....eeee..eeeeeeee..eeeeee............hhhhhhhhhhhhhhh....hhhhhh.eeeeeeee..eeeeee...hhhhhhhhhhhh...hhhhhh..hhhhhhhh..........eeeeeee..eeeeee...hhhhhhhh......eeeee...hhhhhhhhhhh....ee.....hhhhhhhhh............eeeeeeeeee........hhhhhhhhhhhhhhhhhhhhh.....ee........hhhhhh..hhhhhhhhh...hhhhhhhhhhhhh...................eeee....hhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhh..............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeeee..ee....ee.................hhhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vr5 B   0 HERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQmLINTPIVPKHIWENKTEEEVLQAANENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNNVAVGmLmKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYmLPANTAGIYINVNKYPLSIPEFRRAmAYAINPEKIVTRAYENmVTAANPAGILPLPGYmKYYPKEVVDKYGFKYDPEmAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWmVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK 557
                            ||      31        41        51        61        71        81        91       101       111       121       131       141       151    |  161       171       181       191       201       211       221       231     | 241       251       261       271|      281       291      |301       311   |   321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
                            0|                                                                                                                                  156-MSE                                                                          237-MSE                            272-MSE                   298-MSE          315-MSE         331-MSE            350-MSE                                  391-MSE                                                                                                                                                                  
                            23                                                                                                                                                                                                                     239-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Phosphate binding protein-like (463)

Protein domain: Oligo-peptide binding protein (OPPA) (34)

Thermotoga maritima [TaxId: 2336] (1)

1a	d1vr5a1	A:23-557
1b	d1vr5b_	B:

(no "CATH Domain" information available for 1VR5)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PBP (391)

Family: SBP_bac_5 (33)

Thermotoga maritima (2)

1a	SBP_bac_5-1vr5B01	B:70-454
1b	SBP_bac_5-1vr5B02	B:70-454

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9X0V0_THEMA | Q9X0V0)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0015197	peptide transporter activity	Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells.
biological process
	GO:0042884	microcin transport	The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055085	transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
	GO:0043190	ATP-binding cassette (ABC) transporter complex	A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter.
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		CC7	[ RasMol ]	+environment [ RasMol ]
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		DC9	[ RasMol ]	+environment [ RasMol ]
		EC1	[ RasMol ]	+environment [ RasMol ]
		EC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:269 - Pro A:270	[ RasMol ]
		Ala B:269 - Pro B:270	[ RasMol ]
		Tyr A:287 - Pro A:288	[ RasMol ]
		Tyr B:287 - Pro B:288	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
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	1vr5
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	Q9X0V0_THEMA \| Q9X0V0
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

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		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	Q9X0V0_THEMA \| Q9X0V0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	Q9X0V0_THEMA \| Q9X0V0	:	4pft 4pfy

(no "Related Entries Specified in the PDB File" available for 1VR5)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 59)

Sites (38, 38)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (6, 6)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File