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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF72 FAMILY PROTEIN (TM1631) FROM THERMOTOGA MARITIMA MSB8 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Nov 04  (Deposition) - 23 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1631) From Thermotoga Maritima At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM1631
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1631
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:72 , GLN A:114 , ARG A:145 , ARG A:191 , HIS A:193 , TYR A:208 , ASN A:239BINDING SITE FOR RESIDUE SO4 A 262
2AC2SOFTWAREPRO A:116 , PHE A:117 , ARG A:145 , ARG A:207 , HOH A:266 , HOH A:310BINDING SITE FOR RESIDUE SO4 A 263
3AC3SOFTWARELYS A:172 , PRO A:178 , TYR A:179 , ARG A:180BINDING SITE FOR RESIDUE SO4 A 264

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VPQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:50 -Pro A:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VPQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VPQ)

(-) Exons   (0, 0)

(no "Exon" information available for 1VPQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with Q9X1W6_THEMA | Q9X1W6 from UniProtKB/TrEMBL  Length:261

    Alignment length:260
                             1                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
         Q9X1W6_THEMA     - -MVYVGTSGFSFEDWKGVVYPEHLKPSQFLKYYWAVLGFRIVELNFTYYTQPSWRSFVQMLRKTPPDFYFTVKTPGSVTHVLWKEGKDPKEDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWFEAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINALQFKKMLEE 259
               SCOP domains d1vpqa_ A: Hypothetical protein TM1631                                                                                                                                                                                                                               SCOP domains
               CATH domains 1vpqA00 A:0-259 Hypothetical protein tm1631.                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------DUF72-1vpqA01 A:18-257                                                                                                                                                                                                                          -- Pfam domains
         Sec.struct. author .eeeeee.................hhhhhhhhhhhh....eeee........hhhhhhhhhh......eeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..eeeeee.................eeeeee..........hhhhh.....hhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vpq A   0 HMVYVGTSGFSFEDWKGVVYPEHLKPSQFLKYYWAVLGFRIVELNFTYYTQPSWRSFVQMLRKTPPDFYFTVKTPGSVTHVLWKEGKDPKEDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWFEAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINALQFKKMLEE 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF72] (3)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1VPQ)

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