1VLI - JenaLib

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Title :   CRYSTAL STRUCTURE OF SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSE (BSU37870) FROM BACILLUS SUBTILIS AT 2.38 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   27 Jul 04 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.38

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (2x)

Keywords :   2636322, Spore Coat Polysaccharide Biosynthesis Protein Spse, Structural Genomics, Jcsg, Protein Structure Initiative, Bsu37870, Spse, Psi, Joint Center For Structural Genomics, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Spore Coat Polysaccharide Biosynthesis Protein Spse (Bsu37870) From Bacillus Subtilis At 2. 38 A Resolution
To Be Published
PubMed: search

Molecule 1 - SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SPSE, IPA-67D
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A
Biological Unit 3 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:214 , HIS A:236 , HOH A:417 , HOH A:455	BINDING SITE FOR RESIDUE ZN A 374

(no "SS Bond" information available for 1VLI)

Asymmetric Unit

No.	Residues
1	Tyr A:185	-	Pro A:186

(no "SAP(SNP)/Variant" information available for 1VLI)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AFP_LIKE	PS50844	Antifreeze protein-like domain profile.	SPSE_BACSU	305-367	1	A:305-367

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AFP_LIKE	PS50844	Antifreeze protein-like domain profile.	SPSE_BACSU	305-367	1	A:305-367

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AFP_LIKE	PS50844	Antifreeze protein-like domain profile.	SPSE_BACSU	305-367	2	A:305-367

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AFP_LIKE	PS50844	Antifreeze protein-like domain profile.	SPSE_BACSU	305-367	2	A:305-367

(no "Exon" information available for 1VLI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:358
 aligned with SPSE_BACSU | P39625 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
           SPSE_BACSU     2 AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPRFFELLTSGVRAVRDIPADTGIVWDDILLKD 368
               SCOP domains d1vlia2 A:2-296 Spore coat polysaccharide biosynthesis protein          SpsE, N-terminal domain                                                                                                                                                                                                        d1vlia1 A:297-368                                                        SCOP domains
               CATH domains 1vliA01 A:2-303 Aldolase class I                                                                                                                                                                                                                                                                              1vliA02 A:304-368 Type Iii Antifreeze Protein Isoform Hplc 12     CATH domains
               Pfam domains -----------------------------------NeuB-1vliA02 A:37-276                                                                                                                                                                                                                           ---------------------------SAF-1vliA01 A:304-365                                         --- Pfam domains
         Sec.struct. author .eeee..eeee.....eeeeeee.....hhhhhhhhhhhhhhhh..eeee...hhhhhh....---------..hhhhhhhhh..hhhhhhhhhhhhhhh..eee....hhhhhhhhhh.....eeehhhhh.hhhhhhhhhh....eeee....hhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhh...eeeee................hhhhhhhhhhhhhhhhhhhhhh.....hhhhhh...........hhhhhh..eeee..............eeee.........hhhhhhhhhh..............hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFP_LIKE  PDB: A:305-367 UniProt: 305-367                      - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vli A   2 AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQmFQADRmYQKDP---------DVSIFSLVQSmEmPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPmIFSTAGAEISDVHEAWRTIRAEGNNQIAImHCVAKYPAPPEYSNLSVIPmLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSFALNPDELKEmVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPRFFELLTSGVRAVRDIPADTGIVWDDILLKD 368
                                    11        21        31        41        51 |     |61  |      -  |     81  | |   91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
                                                                              53-MSE |   64        74        84-MSE                                                          149-MSE                       179-MSE             199-MSE                                                      260-MSE                                                                                                        
                                                                                    59-MSE                     86-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AFP_III-like (6)

Family: SAF (6)

Bacillus subtilis (1)

SAF-1vliA01

A:304-365

Clan: TIM_barrel (694)

Family: NeuB (4)

Bacillus subtilis (1)

NeuB-1vliA02

A:37-276

Asymmetric Unit(hide GO term definitions)

Chain A (SPSE_BACSU | P39625)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
	GO:0016051	carbohydrate biosynthetic process	The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.

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Description

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