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(-) Description

Title :  A NOVEL ADP- AND ZINC-BINDING FOLD FROM FUNCTION-DIRECTED IN VITRO EVOLUTION
 
Authors :  P. Lo Surdo, M. A. Walsh, M. Sollazzo
Date :  28 Jan 04  (Deposition) - 26 Mar 04  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Artificial Nucleotide Binding Protein, Nucleotide Binding Protein, In Vitro Evolution, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Lo Surdo, M. A. Walsh, M. Sollazzo
A Novel Adp- And Zinc-Binding Fold From Function-Directed In Vitro Evolution
Nat. Struct. Mol. Biol. V. 11 382 2004
PubMed-ID: 15024384  |  Reference-DOI: 10.1038/NSMB745
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ARTIFICIAL NUCLEOTIDE BINDING PROTEIN (ANBP)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET-24D WITH N-HIS- TEV CLEAVAGE SITE
    Expression System Taxid: 469008
    Fragment: NUCLEOTIDE BINDING DOMAIN
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: THIS IS A RANDOMLY GENERATED PROTEIN. THE PROTEIN WAS ISOLATED BY CYCLES OF IN VITRO EVOLUTIONARY SELECTION, FROM A RANDOM-SEQUENCE LIBRARY OF 6 X 10**12 MRNA-DISPLAYED PROTEINS. EVOLUTION OF THE PROTEINS PRODUCED WAS DIRECTED BY THE ABILITY TO BIND ATP
    Other Details - Source: SYNTHETIC GENE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:23 , CYS A:26 , CYS A:46 , CYS A:49BINDING SITE FOR RESIDUE ZN A1075
2AC2SOFTWARELYS A:34 , LYS A:36 , ARG A:41 , TYR A:43 , ASN A:44 , MET A:45 , PHE A:50 , TYR A:61 , HIS A:62 , GLY A:63 , HIS A:64 , HOH A:2093 , HOH A:2094 , HOH A:2095 , HOH A:2096 , HOH A:2097 , HOH A:2098BINDING SITE FOR RESIDUE ADP A1074

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UW1)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains d1uw1a_ A: Artificial nucleotide binding protein (ANBP)             SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............eeee..eeeee..hhhhhhhhhhhh......eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1uw1 A  7 DDKKTNWLKRIYRVRPCVKCKVAPRNWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHDDWLMYADS 73
                                    16        26        36        46        56        66
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

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  1uw1
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