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(-) Description

Title :  CRYSTAL STRUCTURE OF GAMMA-BUTYROLACTONE RECEPTOR (ARPA LIKE PROTEIN)
 
Authors :  R. Natsume, T. Senda, S. Horinouchi
Date :  15 Jul 03  (Deposition) - 27 Jul 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helix-Turn-Helix, Alpha-Helix-Bundle, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Natsume, Y. Ohnishi, T. Senda, S. Horinouchi
Crystal Structure Of A Gamma-Butyrolactone Autoregulator Receptor Protein In Streptomyces Coelicolor A3(2)
J. Mol. Biol. V. 336 409 2004
PubMed-ID: 14757054  |  Reference-DOI: 10.1016/J.JMB.2003.12.040

(-) Compounds

Molecule 1 - A-FACTOR RECEPTOR HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: A3(2)
    Synonym: CPRB, BACTERIAL AUTOREGULATOR RECEPTOR PROTEIN, GAMMA- BUTYROLACTONE RECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1UI5)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:159 -B:159

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UI5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UI5)

(-) Exons   (0, 0)

(no "Exon" information available for 1UI5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
 aligned with O66122_STRCH | O66122 from UniProtKB/TrEMBL  Length:215

    Alignment length:208
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204        
         O66122_STRCH     5 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALMRLTFGMARLCVQGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQET 212
               SCOP domains d1ui5a1 A:5-75 A-factor receptor homolog CprB                          ----d1ui5a2 A:80-212 A-factor receptor homo log CprB                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......-..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh....--------hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ui5 A   5 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALmRLTFGmARLCVQGPVLRAGLRLATAGVPVRP-LPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVV--------REPRRLAEmWYILIRGmVPVTRRARYVTLAARLEQET 212
                                    14        24        34        44        54        64        74        84  |     94       104       114   | | 124       134       144       154       164  |      - |     184       194       204        
                                                                                                             87-MSE |                      118 |                                            167      176     184-MSE 192-MSE                
                                                                                                                   93-MSE                    120                                                                                            


Chain B from PDB  Type:PROTEIN  Length:203
 aligned with O66122_STRCH | O66122 from UniProtKB/TrEMBL  Length:215

    Alignment length:209
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204         
         O66122_STRCH     5 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALMRLTFGMARLCVQGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQETG 213
               SCOP domains d1ui5b1 B:5-75 A-factor receptor homolog CprB                              d1ui5b2 B:80-212 A-factor receptor hom  olog CprB                                                                                    - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.----.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....--..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ui5 B   5 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDL----YSSLEALmRLTFGmARLCVQGPVLRAGLRLATAGVPVR--LPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEmWYILIRGmVPVTRRARYVTLAARLEQETG 213
                                    14        24        34        44        54        64        74|    |  84  |     94       104       114  |  | 124       134       144       154       164       174       184       194       204         
                                                                                                 75   80     87-MSE |                     117  |                                                             184-MSE 192-MSE                 
                                                                                                                   93-MSE                    120
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UI5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UI5)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (O66122_STRCH | O66122)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1ui5
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  O66122_STRCH | O66122
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O66122_STRCH | O66122: 5h58
UniProtKB/TrEMBL
        O66122_STRCH | O66122: 1ui6 4pxi

(-) Related Entries Specified in the PDB File

1ui6 THE SAME PROTEIN IN DIFFERENT CRYSTAL FORM