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(-) Description

Title :  SOLUTION STRUCTURE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING A BUTADIENE DERIVED N1 B-HYDROXYALKYL ADDUCT ON DEOXYINOSINE IN THE HUMAN N-RAS CODON 61 SEQUENCE
 
Authors :  T. A. Scholdberg, W. K. Merritt, S. M. Dean, A. Kowalcyzk, T. M. Harris, C. M. Harris, R. S. Lloyd, M. P. Stone
Date :  30 Jul 04  (Deposition) - 10 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Nmr, Butadiene, Deoxyinosine, Ras61, , Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. A. Scholdberg, W. K. Merritt, S. M. Dean, A. Kowalcyzk, C. M. Harris, T. M. Harris, C. J. Rizzo, R. S. Lloyd, M. P. Stone
Structure Of An Oligodeoxynucleotide Containing A Butadiene Oxide-Derived N1 Beta-Hydroxyalkyl Deoxyinosine Adduct In The Human N-Ras Codon 61 Sequence.
Biochemistry V. 44 3327 2005
PubMed-ID: 15736943  |  Reference-DOI: 10.1021/BI0482452
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*GP*AP*CP*(2BD)P*AP*GP*AP*AP*G)-3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
12BD1Mod. NucleotideN1-(1-HYDROXY-3-BUTEN-2(S)-YL)-2'-DEOXYINOSINE MONOPHOSPHORIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1U6N)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1u6n A  1 CGGACiAGAAG 11
                                 |  10 
                                 6-2BD 

Chain B from PDB  Type:DNA  Length:11
                                          
                  1u6n B 12 CTTCTTGTCCG 22
                                    21 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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1u6o