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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN PA1353 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  T. Min, H. Mu, L. Shapiro, S. K. Burley, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date :  30 Jul 04  (Deposition) - 14 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.81
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hypothetical Protein, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Min, H. Mu, L. Shapiro
The Crystal Structure Of A Hypothetical Protein From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1U6L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1U6L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1U6L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U6L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1U6L)

(-) Exons   (0, 0)

(no "Exon" information available for 1U6L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with Q9I3Z1_PSEAE | Q9I3Z1 from UniProtKB/TrEMBL  Length:137

    Alignment length:137
                             1                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       
         Q9I3Z1_PSEAE     - -MQIVPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASFGMFTDRFGVAWMVNCEQD 136
               SCOP domains d1u6la_ A: Hypothetical protein PA1353                                                                                                    SCOP domains
               CATH domains -------1u6lA01 A:9-138 2,3-Dihydroxybiph    enyl 1,2-Dioxygenase, domain 1                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh.eeeeeee......----.......eeeeeeee..eeeeeee............eeeeee..hhhhhhhhhhhhhh..eeeeeeeee..eeeeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u6l A   2 SLQIVPYLIFNGNCREAFSCYHQHLGGTLEAmLPFGDSPE----PADWKDKImHARLVVGSFALmASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQmPLGPTFWAASFGmFTDRFGVAWmVNCEQD 138
                                    11        21        31 |      41    |   51  |     61    |   71        81        91       101       111       121|      131|      
                                                          33-MSE  41   46      54-MSE      66-MSE                                    109-MSE      122-MSE   132-MSE  


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with Q9I3Z1_PSEAE | Q9I3Z1 from UniProtKB/TrEMBL  Length:137

    Alignment length:137
                             1                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       
         Q9I3Z1_PSEAE     - -MQIVPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASFGMFTDRFGVAWMVNCEQD 136
               SCOP domains d1u6lb_ B: Hypothetical protein PA1353                                                                                                    SCOP domains
               CATH domains -------1u6lB01 B:9-138 2,3-Dihydroxybiph    enyl 1,2-Dioxygenase, domain 1                                                                CATH domains
           Pfam domains (1) --Glyoxalase-1u6lB01 B:4-133                                                                                                        ----- Pfam domains (1)
           Pfam domains (2) --Glyoxalase-1u6lB02 B:4-133                                                                                                        ----- Pfam domains (2)
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh.eeeeeee......----.......eeeeeeee..eeeeeee............eeeeeeeeehhhhhhhhhhhhh..eeee..........eeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u6l B   2 SLQIVPYLIFNGNCREAFSCYHQHLGGTLEAmLPFGDSPE----PADWKDKImHARLVVGSFALmASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQmPLGPTFWAASFGmFTDRFGVAWmVNCEQD 138
                                    11        21        31 |      41    |   51  |     61    |   71        81        91       101       111       121|      131|      
                                                          33-MSE  41   46      54-MSE      66-MSE                                    109-MSE      122-MSE   132-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Glyoxalase (58)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1U6L)

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