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(-) Description

Title :  RH3 DESIGNED RIGHT-HANDED COILED COIL TRIMER
 
Authors :  J. J. Plecs, P. B. Harbury, P. S. Kim, T. Alber
Date :  28 May 04  (Deposition) - 12 Oct 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x)
Keywords :  Coiled Coil; De Novo Design, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Plecs, P. B. Harbury, P. S. Kim, T. Alber
Structural Test Of The Parameterized-Backbone Method For Protein Design
J. Mol. Biol. V. 342 289 2004
PubMed-ID: 15313624  |  Reference-DOI: 10.1016/J.JMB.2004.06.051
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIGHT-HANDED COILED COIL TRIMER
    Chains: A, B, C
    Engineered: YES
    Other Details: CHEMICAL PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (1x): A (1x)B (1x)C (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 35)

Asymmetric Unit (5, 35)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2CGU6Mod. Amino AcidGAMMA-CARBOXY-GLUTAMIC ACID
3CL5Ligand/IonCHLORIDE ION
4IIL18Mod. Amino AcidISO-ISOLEUCINE
5NI3Ligand/IonNICKEL (II) ION
Biological Unit 1 (3, 27)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2CGU6Mod. Amino AcidGAMMA-CARBOXY-GLUTAMIC ACID
3CL-1Ligand/IonCHLORIDE ION
4IIL18Mod. Amino AcidISO-ISOLEUCINE
5NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CGU2Mod. Amino AcidGAMMA-CARBOXY-GLUTAMIC ACID
3CL-1Ligand/IonCHLORIDE ION
4IIL6Mod. Amino AcidISO-ISOLEUCINE
5NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECGU B:119 , CGU B:123 , CL B:411 , HOH B:412BINDING SITE FOR RESIDUE NI B 401
2AC2SOFTWARELYS A:27 , GLN A:30 , HOH A:653 , CGU B:119 , CGU B:123 , LYS B:126 , NI B:401 , HOH B:412BINDING SITE FOR RESIDUE CL B 411
3AC3SOFTWARECGU A:19 , CGU A:23 , CL B:421 , CL B:422BINDING SITE FOR RESIDUE NI B 402
4AC4SOFTWARECGU A:19 , CGU A:23 , LYS B:115 , NI B:402 , CL B:422 , HOH B:520 , CGU C:219BINDING SITE FOR RESIDUE CL B 421
5AC5SOFTWARECGU A:19 , CGU A:23 , LYS A:26 , NI B:402 , CL B:421 , CGU C:223BINDING SITE FOR RESIDUE CL B 422
6AC6SOFTWARECL B:431 , CL B:432 , CGU C:219 , CGU C:223BINDING SITE FOR RESIDUE NI B 403
7AC7SOFTWARECGU A:23 , CGU B:119 , NI B:403 , CL B:432 , CGU C:223BINDING SITE FOR RESIDUE CL B 431
8AC8SOFTWARECGU B:119 , CGU B:123 , NI B:403 , CL B:431 , HOH B:645 , CGU C:219 , CGU C:223 , LYS C:226BINDING SITE FOR RESIDUE CL B 432

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TGG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TGG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TGG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TGG)

(-) Exons   (0, 0)

(no "Exon" information available for 1TGG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains d1tgga_ A:                         SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 1tgg A   0 xAEiEQiKKEIAYLiKKiKeEILeEiKKiKQEIA  33
                            |  |  |  9    |  |19   | |  29    
                            |  |  |      14-IIL|   | |  |     
                            0-ACE |         17-IIL | |  |     
                               3-IIL          19-CGU |  |     
                                  6-IIL           23-CGU|     
                                                    25-IIL    
                                                       28-IIL 


Chain B from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains d1tggb_ B:                         SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 1tgg B 100 xAEiEQiKKEIAYLiKKiKeEILeEiKKiKQEIA 133
                            |  |  |109    |  119   | | 129    
                            |  |  |     114-IIL|   | |  |     
                          100-ACE |        117-IIL | |  |     
                             103-IIL         119-CGU |  |     
                                106-IIL          123-CGU|     
                                                   125-IIL    
                                                      128-IIL 


Chain C from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains d1tggc_ C:                         SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 1tgg C 200 xAEiEQiKKEIAYLiKKiKeEILeEiKKiKQEIA 233
                            |  |  |209    |  219   | | 229    
                            |  |  |     214-IIL|   | |  |     
                          200-ACE |        217-IIL | |  |     
                             203-IIL         219-CGU |  |     
                                206-IIL          223-CGU|     
                                                   225-IIL    
                                                      228-IIL
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1TGG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TGG)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1TGG)

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1rh4