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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN ORTHOLOGUE FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  C. Shammas, A. J. Warren
Date :  14 May 04  (Deposition) - 22 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Shwachman-Bodian-Diamond Syndrome Protein Orthologue, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Shammas, T. F. Menne, C. Hilcenko, S. R. Michell, B. Goyenechea, G. R. Boocock, P. R. Durie, J. M. Rommens, A. J. Warren
Structural And Mutational Analysis Of The Sbds Protein Family. Insight Into The Leukemia-Associated Shwachman-Diamond Syndrome.
J. Biol. Chem. V. 280 19221 2005
PubMed-ID: 15701631  |  Reference-DOI: 10.1074/JBC.M414656200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF0491
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPRSET
    Expression System StrainC41
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneAF0491
    Organism ScientificARCHAEOGLOBUS FULGIDUS
    Organism Taxid2234

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1T95)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T95)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T95)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T95)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0023PS01267 Uncharacterized protein family UPF0023 signature.SDO1_ARCFU36-55  1A:42-61

(-) Exons   (0, 0)

(no "Exon" information available for 1T95)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:230
 aligned with SDO1_ARCFU | O29759 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:230
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234
           SDO1_ARCFU     5 DKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKVLRRIG 234
               SCOP domains d1t95a2 A:11-86 Hypothetical protein AF0491, N-terminal domain              d1t95a1 A:87-161 Hypothetical protein AF0491, middle domain                d1t95a3 A:162-234 Hypothetical protein AF0491, C-terminal domain         ------ SCOP domains
               CATH domains --1t95A01 A:13-92  [code=3.30.1250.10, no name defined]                           ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains SBDS-1t95A02 A:11-101                                                                      --SBDS_C-1t95A01 A:104-226                                                                                                   -------------- Pfam domains
         Sec.struct. author ...eeeeeee..eeeeeeehhhhhhhhhh....hhhhhh.....eee....ee.hhhhhhhhhh..hhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhee........hhhhhhhhhhhh............hhhhhhhhhh.....ee.eeeeeeeehhhhhhhhhhhhhhhh.eeeeee.....eeeeeeee..hhhhhhhhhhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------UPF0023  PDB: A:42-6----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t95 A  11 DKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREmLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEmEIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVmRIPSGmYGDLmDLLGKVAKGEALTKVLRRIG 240
                                    20        30        40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200       210    |  220       230       240
                                                                                                                    101-MSE                                                              170-MSE                                209-MSE |    |                    
                                                                                                                                                                                                                                      215-MSE|                    
                                                                                                                                                                                                                                           220-MSE                

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: EF-G_C (20)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SDO1_ARCFU | O29759)
biological process
    GO:0042256    mature ribosome assembly    The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional ribosome.
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SDO1_ARCFU | O297591p9q

(-) Related Entries Specified in the PDB File

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